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...tatagcttgttaatgtatatagatgagcacttctgtggttttttacctgtcttctgagtttaaaataggttgtgaacgcatatcgtgcatccacctgcagAGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCATACATGCTGTTCTTCTGCCAAAAGATGCAGGCTCTTCTTTACAAAGGTC
species | Zea mays |
transcript | GRMZM2G096343_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACG AGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCAEST: gi|89758526|gb|DY687677.1|DY687677
genomic: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACGgtatgcatca ... ccacctgcagAGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCA
EST: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACG AGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCAEST: gi|76282122|gb|DV021690.1|DV021690
genomic: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACGgtatgcatca ... ccacctgcagAGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCA
EST: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACG AGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCAEST: gi|211335511|gb|FL455439.1|FL455439
genomic: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACGgtatgcatca ... ccacctgcagAGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCA
EST: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACG AGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCAEST: gi|211297692|gb|FL447045.1|FL447045
genomic: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACGgtatgcatca ... ccacctgcagAGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCA
EST: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACG AGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCAEST: gi|148956514|gb|EC902353.2|EC902353
genomic: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACGgtatgcatca ... ccacctgcagAGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCA
EST: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACG AGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCAEST: gi|149081128|gb|EE170234.2|EE170234
genomic: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACGgtatgcatca ... ccacctgcagAGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCA
EST: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACG AGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCAEST: gi|71422117|gb|DR805619.1|DR805619
genomic: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACGgtatgcatca ... ccacctgcagAGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCA
EST: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACG AGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCA
genomic: GGCTGAATCTGCTGGTGCTTCTGCGATTATAATTATCAATGATAAGCACGgtatgcatca ... ccacctgcagAGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCA
cctgtcttctgagtttaaaataggttgtgaacgcatatcgtgcatccacctgcagAGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCATACATGCTGTTCTTCTGCCAAAAGATGCAGGCTCTTCTTTACAAAGGTC
tccacct CT-rich tract
agtttaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatagcttgttaatgtatatagatgagcacttctgtggttttttacctgtcttctgagtttaaaataggttgtgaacgcatatcgtgcatccacctgcagAGTTATACAAGATGGTATGTGAGACCAATGAAACAAATTTAGATATTGGCATACATGCTGTTCTTCTGCCAAAAGATGCAGGCTCTTCTTTACAAAGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - gcacttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgcat