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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttcatgcatggggtcaggtttaataaacatactgcataactgtatactgaagcttaaattgatatctatcatctggtttgcgtatcctgcactgttaaatgtcaatattatgttttatatgaaatactgggggattacatacaatatttgttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCATTCTGCAATGAATGGACTCCTTCCTCCTGAGATTCGAGTCAGGGAAATTA

Basic information

species Zea mays
transcript GRMZM2G095782_T05
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095782_T05 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g19954.1 (Oryza sativa), 3'ss of exon 3
gtgttcatgcatggggtcaggtttaataaacatactgcataactgtatactgaagcttaaattgatatctatcatctggtttgcgtatcctgcactgttaaatgtca-atattatgttttatatgaaatactgggggattacatacaatatttgttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCATTCTGCAATGAATGGACTCCTTCCTCCTGAGATTCGAGTCAGGGAAATTA
                    ||| ||| | | ||   |||| ||||| |     | | || |||| || |||  ||    ||   |||| ||||| | |   | |    | || |  ||| | |   |||  | ||| | ||| |  ||||||  ||| |  ||||||| ||||| || || || ||    |||  ||| ||   ||| || || |||||||| ||||| || ||||| | |||||||||||| ||||||||||
--------------------gttcaattatctta--acatatctgtaaataagtgttcaagttgagatatatagtcccactta--tatcttgcaccgcttgttctggtgttttgtaatttttgttttatatggaggggtaacacatcatattt--tgtatctagGTGGCGCATTTCACCACGCCTTTTTCCTACCATTGTCTTGATAGCATGCACTCTGCAATCAATGGGCTTCTTCCACATGAGATTCGAGTGAGGGAAATTA

upper sequence: GRMZM2G095782_T05 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g19954.2 (Oryza sativa), 3'ss of exon 3
gtgttcatgcatggggtcaggtttaataaacatactgcataactgtatactgaagcttaaattgatatctatcatctggtttgcgtatcctgcactgttaaatgtca-atattatgttttatatgaaatactgggggattacatacaatatttgttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCATTCTGCAATGAATGGACTCCTTCCTCCTGAGATTCGAGTCAGGGAAATTA
               |||||||| ||| | | ||   |||| ||||| |     | | || |||| || |||  ||    ||   |||| ||||| | |   | |    | || |  ||| | |   |||  | ||| | ||| |  ||||||  ||| |  ||||||| ||||| || || || ||    |||  ||| ||   ||| || || |||||||| ||||| || ||||| | |||||||||||| ||||||||||
---------------gtcaggttcaattatctta--acatatctgtaaataagtgttcaagttgagatatatagtcccactta--tatcttgcaccgcttgttctggtgttttgtaatttttgttttatatggaggggtaacacatcatattt--tgtatctagGTGGCGCATTTCACCACGCCTTTTTCCTACCATTGTCTTGATAGCATGCACTCTGCAATCAATGGGCTTCTTCCACATGAGATTCGAGTGAGGGAAATTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091690|gb|DV520064.1|DV520064
EST:     GCTGGATCGGAAGAAACTATGCTTAGTCGGTGCAGGCAGGACTGATACAG                         GTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
genomic: GCTGGATCGGAAGAAACTATGCTTAGTCGGTGCAGGCAGGACTGATACAGgtgttcatgc ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|211213555|gb|FL114043.1|FL114043
EST:     GCTGGATCGGAAGAAACTATGCTTAGTCGGTGCAGGCAGGACTGATACAG                         GTGGCACATTTTACTACACCCTTCAGTTACAGTTTCCTCAGTAGTATTCAT
genomic: GCTGGATCGGAAGAAACTATGCTTAGTCGGTGCAGGCAGGACTGATACAGgtgttcatgc ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|71317330|gb|DR795358.1|DR795358
EST:     GCTGGATCGGAAGAAACTATGCTTAGTCGGTGCAGGCAGGACTGATACAG                         GTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
genomic: GCTGGATCGGAAGAAACTATGCTTAGTCGGTGCAGGCAGGACTGATACAGgtgttcatgc ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|211213558|gb|FL114046.1|FL114046
EST:     GCTGGATCGGAAGAAACTATGCTTAGTCGGTGCAGGCAGGACTGATACAG                         GTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
genomic: GCTGGATCGGAAGAAACTATGCTTAGTCGGTGCAGGCAGGACTGATACAGgtgttcatgc ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|211213554|gb|FL114042.1|FL114042
EST:     GCTGGATCGGAAGAAACTATGCTTAGTCGGTGCAGGCAGGACTGATACAG                         GTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
genomic: GCTGGATCGGAAGAAACTATGCTTAGTCGGTGCAGGCAGGACTGATACAGgtgttcatgc ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatgttttatatgaaatactgggggattacatacaatatttgttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCATTCTGCAATGAATGGACTCCTTCCTCCTGAGATTCGAGTCAGGGAAATTA
                                             ttgttttc  CT-rich tract
     tgttttatatgaaata  TA-rich tract