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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaataaacatactgcataactgtatactgaagcttaaattgatatctatcatctggtttgcgtatcctgcactgttaaatgtcaatattatgttttatatgaaatactgggggattacatacaatatttgttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCATTCTGCAATGAATGGACTCCTTCCTCCTGAGATTCGAGTCAGGGAAATTA

Basic information

species Zea mays
transcript GRMZM2G095782_T04
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095782_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g19954.1 (Oryza sativa), 3'ss of exon 3
gtttaataaacatactgcataactgtatactgaagcttaaattgatatctatcatctggtttgcgtatcctgcactgttaaatgtca-atattatgttttatatgaaatactgggggattacatacaatatttgttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCATTCTGCAATGAATGGACTCCTTCCTCCTGAGATTCGAGTCAGGGAAATTA
||| ||| | | ||   |||| ||||| |     | | || |||| || |||  ||    ||   |||| ||||| | |   | |    | || |  ||| | |   |||  | ||| | ||| |  ||||||  ||| |  ||||||| ||||| || || || ||    |||  ||| ||   ||| || || |||||||| ||||| || ||||| | |||||||||||| ||||||||||
gttcaattatctta--acatatctgtaaataagtgttcaagttgagatatatagtcccactta--tatcttgcaccgcttgttctggtgttttgtaatttttgttttatatggaggggtaacacatcatattt--tgtatctagGTGGCGCATTTCACCACGCCTTTTTCCTACCATTGTCTTGATAGCATGCACTCTGCAATCAATGGGCTTCTTCCACATGAGATTCGAGTGAGGGAAATTA

upper sequence: GRMZM2G095782_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g19954.2 (Oryza sativa), 3'ss of exon 3
-----gtttaataaacatactgcataactgtatactgaagcttaaattgatatctatcatctggtttgcgtatcctgcactgttaaatgtca-atattatgttttatatgaaatactgggggattacatacaatatttgttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCATTCTGCAATGAATGGACTCCTTCCTCCTGAGATTCGAGTCAGGGAAATTA
     ||| ||| | | ||   |||| ||||| |     | | || |||| || |||  ||    ||   |||| ||||| | |   | |    | || |  ||| | |   |||  | ||| | ||| |  ||||||  ||| |  ||||||| ||||| || || || ||    |||  ||| ||   ||| || || |||||||| ||||| || ||||| | |||||||||||| ||||||||||
gtcaggttcaattatctta--acatatctgtaaataagtgttcaagttgagatatatagtcccactta--tatcttgcaccgcttgttctggtgttttgtaatttttgttttatatggaggggtaacacatcatattt--tgtatctagGTGGCGCATTTCACCACGCCTTTTTCCTACCATTGTCTTGATAGCATGCACTCTGCAATCAATGGGCTTCTTCCACATGAGATTCGAGTGAGGGAAATTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32839977|gb|CD979658.1|CD979658
EST:     GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAG                         GTGGCACATTTTACTACACCCTTCAGTTACCGTTGCCTCAGTAGTATTCAT
genomic: GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAGgtttaataaa ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|89249529|gb|DY621315.1|DY621315
EST:     GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAG                         GTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCCTCAGTAGTATTCA
genomic: GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAGgtttaataaa ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCC-TCAGTAGTATTCA
EST: gi|101390146|gb|EB817005.1|EB817005
EST:     GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAG                         GTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
genomic: GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAGgtttaataaa ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|32835800|gb|CD975478.1|CD975478
EST:     GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAG                         GTGGCACATTTTACTACACCCTTCAGTTACCGTTGCCTCAGTAGTATTCAT
genomic: GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAGgtttaataaa ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|32835822|gb|CD975500.1|CD975500
EST:     GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAG                         GTGGCACATTTTACTACACCCTTCAGTTACCGTTGCCTCAGTAGTATTCAT
genomic: GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAGgtttaataaa ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|33468040|gb|CF245089.1|CF245089
EST:     GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAG                         GTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
genomic: GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAGgtttaataaa ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|32839976|gb|CD979657.1|CD979657
EST:     GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAG                         GTGGCACATTTTACTACACCCTTCAGTTACCGTTGCCTCAGTAGTATTCAT
genomic: GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAGgtttaataaa ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|32839936|gb|CD979617.1|CD979617
EST:     GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAG                         GTGGCACATTTTACTACACCCTTCAGTTACCGTTGCCTCAGTAGTATTCAT
genomic: GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAGgtttaataaa ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|76013636|gb|DT940806.1|DT940806
EST:     GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAG                         GTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
genomic: GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAGgtttaataaa ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|91876899|gb|EB406856.1|EB406856
EST:     GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAG                         GTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
genomic: GCTTAGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAGgtttaataaa ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT
EST: gi|32839935|gb|CD979616.1|CD979616
EST:     AGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAG                         GTGGCACATTTTACTACACCCTTCAGTTACCGTTGCCTCAGTAGTATTCAT
genomic: AGTCGGTGCAGGCAGGACTGATACAGGTGTTCATGCATGGGGTCAGgtttaataaa ... ttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattatgttttatatgaaatactgggggattacatacaatatttgttgttttcagGTGGCACATTTTACTACACCCTTCAGTTACAGTTGCCTCAGTAGTATTCATTCTGCAATGAATGGACTCCTTCCTCCTGAGATTCGAGTCAGGGAAATTA
                                             ttgttttc  CT-rich tract
     tgttttatatgaaata  TA-rich tract