1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctgtttcctctataggttatgctgctcaagtttgtgactgcgcaatgcctgcttattctagcatcctgattacttactgctacatttcgccctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCACAACTTCGCAACGACATGCGTCTGCCGCGTCCCCAAGCATCTGAGGGAGG
species | Zea mays |
transcript | GRMZM2G095670_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCACEST: gi|71306036|gb|DR789153.1|DR789153
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
EST: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCACEST: gi|7227679|gb|AW566320.1|AW566320
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
EST: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCACEST: gi|60359481|gb|DN226454.1|DN226454
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
EST: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCACEST: gi|211218105|gb|FL085264.1|FL085264
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
EST: GCCTAGACCAGGGTTATGCAGACCGYAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGEST: gi|71306037|gb|DR789154.1|DR789154
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCG
EST: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCACEST: gi|78545123|gb|DV622621.1|DV622621
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
EST: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCACEST: gi|7216784|gb|AW562906.1|AW562906
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
EST: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCACEST: gi|211218104|gb|FL085263.1|FL085263
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
EST: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGCCTTTGCTGCCTCCGGTGCATACAGACACGTEST: gi|78544043|gb|DV621541.1|DV621541
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGT
EST: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCACEST: gi|60394589|gb|DN227459.1|DN227459
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
EST: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAGACACGTGACCACEST: gi|19822372|gb|BQ048396.1|BQ048396
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
EST: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCACEST: gi|211215545|gb|FL085259.1|FL085259
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
EST: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAG CCAGGTTACGAGCGC-TTTGCTGCCTCCGGTGCATACAGACACGTGACCACEST: gi|33100874|gb|CF060834.1|CF060834
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
EST: GCCTGGACCAGGGTTATGCAGATCGTAACCTGATCGCAAAGTGGAAAAAG CCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
genomic: GCCTAGACCAGGGTTATGCAGACCGTAACCTGATTGCAAAGTGGAAAAAGgtaatcatcc ... cctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCAC
tgcctgcttattctagcatcctgattacttactgctacatttcgccctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCACAACTTCGCAACGACATGCGTCTGCCGCGTCCCCAAGCATCTGAGGGAGG
tacttac putative branch site (score: 1)
catttcgccctctt putative PPT
ttattcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtttcctctataggttatgctgctcaagtttgtgactgcgcaatgcctgcttattctagcatcctgattacttactgctacatttcgccctcttgcagCCAGGTTACGAGCGCCTTTGTTGCCTCCGGTGCATACAAACACGTGACCACAACTTCGCAACGACATGCGTCTGCCGCGTCCCCAAGCATCTGAGGGAGG
ctgtttc
- - - - - - - - - - gctgctc
- - - - - - - - - - - - - - - - - tgactgc
- - - - - - - - - - - - - - - - - - - - - - atgcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctac