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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcacgaatttttgtgtcttatgttgttgcatgcctagaacatggcaaatgtttcagtcatgcaaggcctgtttgttttctactagcagtcctgactgagcttaacaatttgcatttcattgcagAATTTTAAACACATAATGAAGCACCTGCAGGGAGCTATAATAATTGGAGGTGCATTCCAAGTGTTTTTGGGATACACAGGCCTCATGTCACTATTTCTTA

Basic information

species Zea mays
transcript GRMZM2G095611_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G095611_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g63870.1 (Oryza sativa), 3'ss of exon 1
gtatgcacgaatttttgtgtcttatgttgttgcatgcctagaaca-tggcaaatgtt-tcagtcatgcaaggcctgtttgttttctactagcagtcctgactgagcttaacaatttgcatttcattgcagAATTTTAAACACATAATGAAGCACCTGCAGGGAGCTATAATAATTGGAGGTGCATTCCAAGTGTTTTTGGGATACACAGGCCTCATGTCACTATTTCTTA
|||||     || | |   | |||| |||| |   || |    || || || ||||| |||   | | |  ||||  |  ||   |   |||  |  |   ||| | |||||  ||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||| | || ||||| |||||||| |||||||||||||| |
gtatgtttatatgtataaattttat-ttgt-gttggcgtgatgcaatgccacatgttgtcatgtagggattgcctcatcattgctttagagcgtttgttgttgaacctaacacgttgtatttcattgcagAACTTTAAGCACATCATGAAGCACCTGCAGGGAGCTATCATAATAGGAGGTGCATTCCAAGTGCTGTTAGGATATACAGGCCTAATGTCACTATTTCTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78090543|gb|DV518917.1|DV518917
EST:     TGCGCTTGCGATCATCAACTCACCAGAATTNATTTGGGATCAATGATAAT                         AATTTTAAACACATAATGAAGCACCTGCAGGGAGCTATAATAATTGGAGGT
genomic: TGCGCTTGCGATCATCAACTCACCAGAATT-ATTTGGGATCAATGATAATgtatgcacga ... ttcattgcagAATTTTAAACACATAATGAAGCACCTGCAGGGAGCTATAATAATTGGAGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgttttctactagcagtcctgactgagcttaacaatttgcatttcattgcagAATTTTAAACACATAATGAAGCACCTGCAGGGAGCTATAATAATTGGAGGTGCATTCCAAGTGTTTTTGGGATACACAGGCCTCATGTCACTATTTCTTA
                                            tttcatt  CT-rich tract
                               ttaacaattt  TA-rich tract