1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtactgtgacgtctgtaaatgataatatttgcattaacaatgttcttaataccctttgttcttattatagaaggttgtaaacttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCA
species | Zea mays |
transcript | GRMZM2G095593_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|20300162|gb|BQ163105.1|BQ163105
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|6095605|gb|AW120272.1|AW120272
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|18963161|gb|BM660274.1|BM660274
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|32935651|gb|CF040463.1|CF040463
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|5296251|gb|AI782931.1|AI782931
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|33095909|gb|CF055903.1|CF055903
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|213170809|gb|FM191861.1|FM191861
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|113704000|gb|EE681504.1|EE681504
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|5762107|gb|AI967155.1|AI967155
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|20507124|gb|BQ279496.1|BQ279496
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|32906982|gb|CF011795.1|CF011795
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: GATATTAAAACTAGACGACGCATCTTCCAG ATACCACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTEST: gi|5296115|gb|AI782990.1|AI782990
genomic: GATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATA-CACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|6194717|gb|AW146821.1|AW146821
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTEST: gi|22714021|gb|BU197442.1|BU197442
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|149008286|gb|EE040435.2|EE040435
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCTTTTACCAGATATTAAAATTAGAGGACGCTTTTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|32930331|gb|CF035143.1|CF035143
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|211247443|gb|FL282637.1|FL282637
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|8318691|gb|BE025256.1|BE025256
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|21987744|gb|BQ779272.1|BQ779272
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|8576996|gb|BE129633.1|BE129633
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|5650403|gb|AI920763.1|AI920763
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: ATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|18661880|gb|BM501630.1|BM501630
genomic: ATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|5847225|gb|AW000304.1|AW000304
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|5901265|gb|AW042365.1|AW042365
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|20513035|gb|BQ280221.1|BQ280221
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|32936539|gb|CF041358.1|CF041358
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: GATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|18654858|gb|BM499663.1|BM499663
genomic: GATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: GATTGAATTTCCTGCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|5325130|gb|AI783321.1|AI783321
genomic: GATTGAATTTCCT-CTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|56382674|gb|CV985343.1|CV985343
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|5846790|gb|AI999873.1|AI999873
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|211247441|gb|FL282635.1|FL282635
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTEST: gi|22472561|gb|BU037041.1|BU037041
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
EST: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAG ATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
genomic: AGATTGAATTTCCTCTACCAGATATTAAAACTAGACGACGCATCTTCCAGgtactgtgac ... acttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTT
aacaatgttcttaataccctttgttcttattatagaaggttgtaaacttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCA
tttgttcttattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtgacgtctgtaaatgataatatttgcattaacaatgttcttaataccctttgttcttattatagaaggttgtaaacttgtgcagATACACACATCGAAAATGACATTAGCTGATGATGTGAACTTGGAAGAGTTTGTTATGACCAAAGACGAGTTTTCGGGTGCTGATATTAAGGCAATCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT