Sequence
atgc intronic sequence ATGC exonic sequencegtacgcacggcacaacacaagccaatgcttcaagtctcaacttacctgagctgaacgacgattggtggcgagacaagagcctaatgctgctccggccgggctctctgtccctggtgggccgctttgcagGGCAACCTGGTGGCCAACACCAAGACGTTCCCGCACGGGATCAAGGCGCTGGCGGACTACGTCCACGGCAAGGGGCTCAAGCTCGGGATCTACTCCGACG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G095126_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os10g35070.2 (Oryza sativa), 3'ss of exon 3
gtacgcacggcacaacacaagccaatgcttcaagtctcaacttacctgagctgaacgacgattg-gtggcgagacaagagcctaatgctgctccggccgggctctctgtccctggtgggccgctttgcagGGCAACCTGGTGGCCAACACCAAGACGTTCCCGCACGGGATCAAGGCGCTGGCGGACTACGTCCACGGCAAGGGGCTCAAGCTCGGGATCTACTCCGACG
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-------------------------ttcttctggactg----tagttgtaatgaacagagttgatgtgattaaaggcagacaaaaaaaaatttcatccacagtacttaatattgatgatactgtcc-cagGGTAATCTTGTGGCCAACAAAAAGACATTCCCCCACGGGATCAAGGCGCTCGCCGATTATGTTCACAGCAAGGGGCTCAAGCTAGGCATTTACTCCGATG
upper sequence: GRMZM2G095126_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os10g35070.1 (Oryza sativa), 3'ss of exon 4
gtacgcacggcacaacacaagccaatgcttcaagtctcaacttacctg-agctg-aacgacgattggtggcgagacaagagcctaatgct-----gctccggccgggctctctgtccctggtgggccgctttgcagGGCAACCTGGTGGCCAACACCAAGACGTTCCCGCACGGGATCAAGGCGCTGGCGGACTACGTCCACGGCAAGGGGCTCAAGCTCGGGATCTACTCCGACG
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gtgtgtgtgataatgcagca-ctgataatttcgatttcttctggactgtagttgtaatgaacagagttgatgtgattaaaggcagacaaaaaaaaatttcatccacagtacttaatattgatgatactgtcc-cagGGTAATCTTGTGGCCAACAAAAAGACATTCCCCCACGGGATCAAGGCGCTCGCCGATTATGTTCACAGCAAGGGGCTCAAGCTAGGCATTTACTCCGATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagagcctaatgctgctccggccgggctctctgtccctggtgggccgctttgcagGGCAACCTGGTGGCCAACACCAAGACGTTCCCGCACGGGATCAAGGCGCTGGCGGACTACGTCCACGGCAAGGGGCTCAAGCTCGGGATCTACTCCGACG
gcctaat putative branch site (score: 3)
ccgcttt putative PPT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtacgcacggcacaacacaagccaatgcttcaagtctcaacttacctgagctgaacgacgattggtggcgagacaagagcctaatgctgctccggccgggctctctgtccctggtgggccgctttgcagGGCAACCTGGTGGCCAACACCAAGACGTTCCCGCACGGGATCAAGGCGCTGGCGGACTACGTCCACGGCAAGGGGCTCAAGCTCGGGATCTACTCCGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT