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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcacagttttctccaatatgatgctaactaccctgcagattttgaacagctcattctgctagcctcttatacttcctttgcttgtgtatccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG

Basic information

species Zea mays
transcript GRMZM2G094497_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 3
gtgtgcacagttttctccaatatgatgctaactaccctgcagattttgaacagctcattctgctagcctcttatac------ttcctttgcttgtgtatccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG
                   |  || | ||   | | || || ||||| |||||   | |||| ||||   ||||||      || ||||  |  |||| |  || | |||||||||||||||| |||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||| || ||||| ||||||||||||
-----------------gtacgtgctactg-ttcctctacaaattttcaacagactaatctggtagcaagttatactgagcatttctttcttcatgtaact-tcttcagGGCCCAAAGTACCAGGAAATTGTAAACATCCGATTGGGAGATGGCACCACTCGCCGTGGCCAAGTTCTGGAAGTTGACGGTGAAAAGGCTGTTGTGCAG

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT4G38510.5 (Arabidopsis thaliana), 3'ss of exon 4
gtgtgcacagttttctccaatatgatgctaactaccctgcagattttgaacagctcattctgctagcctcttatacttcctt-tgcttgtgtatccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG
                            ||       | |    |||         | | | || | | | |    |||||  || |  ||  | | ||  ||||| || || |||||||||||||| || ||||| ||||| ||||| || |  || ||||||||||| || ||||||||||| || ||||||||||| |||
---------------------------gtattggtgtttccatctttctcttttataatgttctcgtcccatgggtttcctgatgatactgctttcctctctagGGGCCTAAATACCAAGAAATTGTCAATATCCGTCTTGGGGATGGAACTACCCGACGTGGTCAAGTTCTCGAAGTTGATGGAGAGAAAGCTGTTGTTCAG

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 3
--gtgtgcacagttttctccaatatg--atgctaactaccctgcagattttgaacagctcattctgctagcctcttatacttcctttgcttgtgtatccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG
    | |||  ||||  | || || |  ||||||| |         | ||||    | | | |   ||  |    || |  | ||| |  |||  ||     || |||| ||||||||||| || ||||| || || ||  | ||||||||  | |   | |||||||| ||  |||||||||||||||| ||||| |||||||||
gtaagagcatcgtttgattcattaagcaatgctaattt--------actttgtgagggtaacttaactgac----taaaacttcttggaatgta-atgataaatcagGGTCCAAAGTACCAGGAGATTGTTAATATTCGCTTAGGAGATGGATCAACGAGACGTGGTCAGGTTTTGGAAGTTGATGGCGAGAAAGCAGTTGTGCAG

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 3
gtgtgcacagttttctccaatatgatgctaactaccctgcagattttgaacagctcattctgctagcctcttatacttcctttgcttgtgtatccat--cattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG
|| | |     ||  |  | |||  |  |   | || | | ||||   |  |  ||  |||| |       |||   ||  |   ||   |    ||  ||  |||| || || || ||||| ||||| || || ||  | |||||||| || | ||| |||||||||||||| ||||||||||| || ||||| |||||||||
gtattcctcactta-tttagtatttttatttattcctttctgattcatatgatttccatctgttcagaatctattgatcaatgattttctttctaattgcaccagGGACCCAAATATCAAGAGATTGTCAATATTCGTTTGGGAGATGGAACAACTCGACGTGGTCAAGTCCTAGAAGTTGATGGTGAGAAAGCAGTTGTGCAG

upper sequence: GRMZM2G094497_T01 (Zea mays), 3'ss of exon 3
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 3
gtgtgcacagttttctccaatatgatgctaactaccctgcaga-ttttgaacagctcattctg----ctagcctcttatact-tcctttgcttgtgtatccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG
||        |||| |   || |  |  |   |    | || | |||| |   |   ||  ||    |||  | || | |   | || |   | |  | |  |  | |||| ||||| || || || ||||| || || || |||||||||||||| |  || |||||||||||| | ||||||||||| || |||||||||||||||
gtagatttgcttttttgtcatttcttctttcttctaatacaaagtttttattggagtatagtgacacctacacactgagatgatactataactcttaaactgt--tcagGGTCCAAAATATCAGGAGATTGTCAATATTCGCCTTGGAGATGGCACAACGCGACGTGGTCAAGTCTTAGAAGTTGATGGGGAGAAAGCTGTTGTGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211474167|gb|FL062075.1|FL062075
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211469120|gb|FL062058.1|FL062058
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211476692|gb|FL062093.1|FL062093
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211476700|gb|FL062101.1|FL062101
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211466590|gb|FL062041.1|FL062041
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211459011|gb|FL062002.1|FL062002
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211355901|gb|FL061989.1|FL061989
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211042632|gb|FL062114.1|FL062114
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|58029618|gb|CX725045.1|CX725045
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|31358862|gb|CD443219.1|CD443219
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211474177|gb|FL062085.1|FL062085
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211042620|gb|FL062102.1|FL062102
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|13150538|gb|BG320860.1|BG320860
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211466588|gb|FL062039.1|FL062039
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211045585|gb|FL062117.1|FL062117
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211045586|gb|FL062118.1|FL062118
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211476689|gb|FL062090.1|FL062090
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211459001|gb|FL061992.1|FL061992
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211474168|gb|FL062076.1|FL062076
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|19058187|gb|BM736854.1|BM736854
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211469113|gb|FL062051.1|FL062051
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211464051|gb|FL062022.1|FL062022
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|31355490|gb|CD439847.1|CD439847
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211466591|gb|FL062042.1|FL062042
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211466583|gb|FL062034.1|FL062034
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211464054|gb|FL062025.1|FL062025
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211471644|gb|FL062069.1|FL062069
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211476695|gb|FL062096.1|FL062096
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211464058|gb|FL062029.1|FL062029
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211459012|gb|FL062003.1|FL062003
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211042625|gb|FL062107.1|FL062107
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211464059|gb|FL062030.1|FL062030
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|19058466|gb|BM737133.1|BM737133
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCA-T
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211471635|gb|FL062060.1|FL062060
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211042624|gb|FL062106.1|FL062106
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|31349484|gb|CD433841.1|CD433841
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211355897|gb|FL061985.1|FL061985
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|14191177|gb|BG833407.1|BG833407
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|31351385|gb|CD435742.1|CD435742
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211042627|gb|FL062109.1|FL062109
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211461526|gb|FL062008.1|FL062008
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211471646|gb|FL062071.1|FL062071
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211471643|gb|FL062068.1|FL062068
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211466592|gb|FL062043.1|FL062043
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211042631|gb|FL062113.1|FL062113
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211355900|gb|FL061988.1|FL061988
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211042628|gb|FL062110.1|FL062110
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211474179|gb|FL062087.1|FL062087
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211471645|gb|FL062070.1|FL062070
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211476697|gb|FL062098.1|FL062098
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211476690|gb|FL062091.1|FL062091
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|30160605|gb|CB924334.1|CB924334
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCGCCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211461527|gb|FL062009.1|FL062009
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211464060|gb|FL062031.1|FL062031
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211459000|gb|FL061991.1|FL061991
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211476699|gb|FL062100.1|FL062100
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|31628315|gb|CD526548.1|CD526548
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCGCCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211469119|gb|FL062057.1|FL062057
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|14191176|gb|BG833406.1|BG833406
EST:     GACTGTATCTGGCTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GACTGTATCTGG-TGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211469117|gb|FL062055.1|FL062055
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211459009|gb|FL062000.1|FL062000
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211469112|gb|FL062050.1|FL062050
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211459007|gb|FL061998.1|FL061998
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211474171|gb|FL062079.1|FL062079
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211469111|gb|FL062049.1|FL062049
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211042623|gb|FL062105.1|FL062105
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211471641|gb|FL062066.1|FL062066
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211464050|gb|FL062021.1|FL062021
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211459003|gb|FL061994.1|FL061994
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211464057|gb|FL062028.1|FL062028
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAGG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|31358847|gb|CD443204.1|CD443204
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211469108|gb|FL062046.1|FL062046
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211459010|gb|FL062001.1|FL062001
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211466585|gb|FL062036.1|FL062036
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211476687|gb|FL062088.1|FL062088
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
EST: gi|211458999|gb|FL061990.1|FL061990
EST:     GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAG                         GGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT
genomic: GGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1025

AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1874

AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 894

AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1262

AGTACAGGACTGTATCTGGTGTTGCTGGGCCTCTGGTCATATTGGATAAAGTAAAGgtgtgcacag ... ccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacagctcattctgctagcctcttatacttcctttgcttgtgtatccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG
                      ttatactt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtgcacagttttctccaatatgatgctaactaccctgcagattttgaacagctcattctgctagcctcttatacttcctttgcttgtgtatccatcattagGGCCCAAAGTACCAAGAAATTGTAAACATCCGACTTGGAGATGGCACCAATCGCCGTGGTCAAGTCCTGGAAGTTGATGGCGAAAAAGCTGTTGTGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT