1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cagcatataacttatgctgaaccacctataattagttctatggaatcatcatagataggcagataatcaataagatgatcttctcttatggtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTG
species | Zea mays |
transcript | GRMZM2G094255_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|211006666|gb|FL081503.1|FL081503
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|211006657|gb|FL081494.1|FL081494
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|211003886|gb|FL081493.1|FL081493
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|149110134|gb|EE293952.2|EE293952
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|88757021|gb|DY541162.1|DY541162
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|211006669|gb|FL081506.1|FL081506
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|211006664|gb|FL081501.1|FL081501
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|91056439|gb|EB166857.1|EB166857
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACTTTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTGGGTGATCGAAAGGGAAT-AACCGEST: gi|31611949|gb|CD568571.1|CD568571
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCG
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|211006671|gb|FL081508.1|FL081508
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|211006662|gb|FL081499.1|FL081499
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|101397352|gb|EB820599.1|EB820599
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|50325237|gb|CO520363.1|CO520363
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATEST: gi|50323498|gb|CO518624.1|CO518624
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
EST: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACG GCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
genomic: ATATTGATGATCATCACTCAAATGAGGACATTGCTTTGGCAATTGGAACGgtgattatta ... gtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCAT
tcatcatagataggcagataatcaataagatgatcttctcttatggtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTG
ataatcaataagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagcatataacttatgctgaaccacctataattagttctatggaatcatcatagataggcagataatcaataagatgatcttctcttatggtctatgtagGCACTACTTGAAGCACTTGGTGATCGAAAGGGAATTAACCGATTTGGTCATTTTACAGCACCGCTTGATGAGGCAGCGGTTGAGGTTATACTG
- - - - - - - tgctgaa