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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctcaggttcatatgccagtattttacagaggatgaatttgtatgcttatgctgttttccatttctgttgaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG

Basic information

species Zea mays
transcript GRMZM2G094051_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G094051_T06 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 3'ss of exon 3
gtgagtctcaggttcatatgccagtattttacagaggatgaatttgtatgcttatgctgttttccatttctgttgaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG
       | ||   | ||| ||  ||      | |   ||  ||||| ||| || ||  |      |  || |      |  ||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||
------gtgagaaac-tataccgctacggcttaaaat-tgtctttgtttgcataagcattgacagttcgctatgctttatgtagTATCAATGCCATGCACCCCAAGACCAGGAAGATCTTGCAGCTTCTGCGGTTGAGGCAG

upper sequence: GRMZM2G094051_T06 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g51630.3 (Oryza sativa), 3'ss of exon 2
------------gtgagtctcaggttcata-tgccagtattttacagaggatgaat---ttgtatgcttatgctg-ttttccatttctgttgaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG
             | |||   |   | ||| || || |   | | ||| |||||     ||||||| | |||||  | || ||  ||||||||  ||  ||||| || ||||||||||| |||||||||||||| ||||||||  |||| |||||||||
gtaaggaaccacttaagttgtattgttataatgtcactgact-atagatgatgatctggttgtatgttgatgctaatgttacaaatctgttga--ctgtagTATCAATGCCATGCACCCGAAGACCAGGAAGATTTTGCAGCTCTTGCGTTTGAGGCAG

upper sequence: GRMZM2G094051_T06 (Zea mays), 3'ss of exon 3
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtctcaggttcatatgccagtattttacagaggatgaatttgtatgcttatgc-----tgttttccatttctgttgaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG
         | || ||| | | |   | || ||    || |  |||| ||| | ||      ||||    ||   | |  |   |  || || || || |||||||| |||||||||||||| ||||||||||| |||||||| |||
-------gtatgt-catttacaatgttctttcaataaattagcttgt-tgcgtgtgaaggagtgttgattataattatgaatcttttagGATCAATGCTATGCACCCGAAGACCAGGAAGATTTTGCAGCTTCTACGATTGAGACAG

upper sequence: GRMZM2G094051_T06 (Zea mays), 3'ss of exon 3
lower sequence: EFJ20182 (Selaginella moellendorffii), 3'ss of exon 2
gtgagtctcaggttcatatgccagtattttacagaggatgaatttgtatgcttatgctgttttccatttctgttgaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG
                  ||    |  |||   ||   | | | ||||         | || ||  ||  | |      | |||||| |||| |||||| || |||||| ||||||||||||||||||| ||  || | |||
-------------gtgagtggtttttctttctcgattttaagtctgtacaaacggagtattatcttttgttttca----tccagTATCAACGACATGCATCCCAAGACCCGGAAGATCTTGCAGCTTCTTCGCCTGCGTCAG

upper sequence: GRMZM2G094051_T06 (Zea mays), 3'ss of exon 3
lower sequence: EFJ23123 (Selaginella moellendorffii), 3'ss of exon 2
gtgagtctcaggttcatatgccagtattttacagaggatgaatttgtatgcttatgctgttttccatttctgttgaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG
                |  |  | | ||       |  |  |  |   | |  | |  || |    ||| | || |   | |||||| |||| |||||| || |||||| ||||||||||||||||||| ||  || | |||
---------------gtgggtgaattttccttctcgattttaagtccgtacaaacggagtataaattttgttttca---tccagTATCAACGACATGCATCCCAAGACCCGGAAGATCTTGCAGCTTCTTCGCCTGCGTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211467480|gb|FL327940.1|FL327940
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|19436979|gb|BM953389.1|BM953389
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211381235|gb|FL355200.1|FL355200
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAA
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAA
EST: gi|211489662|gb|FL352063.1|FL352063
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|71311932|gb|DR792458.1|DR792458
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211162458|gb|FL355955.1|FL355955
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211094483|gb|FL367316.1|FL367316
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211483249|gb|FL325697.1|FL325697
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|78112606|gb|DV531000.1|DV531000
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|60349187|gb|DN216160.1|DN216160
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|71759958|gb|DR957895.1|DR957895
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTTTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211425293|gb|FL350052.1|FL350052
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|93016886|gb|EB642406.1|EB642406
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCTTCCGGGG                         TATTAACGCCATGCCCCCTAAGACCAGGAAGATCTTGCAGCTTTTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211197410|gb|FL309893.1|FL309893
EST:     TCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGAT
genomic: TCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCC-GGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGAT
EST: gi|31558660|gb|CD527872.1|CD527872
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|31611989|gb|CD568611.1|CD568611
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|22545876|gb|BU098115.1|BU098115
EST:     AAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: AAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|67011751|gb|CO440500.1|CO440500
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|29130012|gb|CB380716.1|CB380716
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|86471442|gb|DY237812.1|DY237812
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|60352654|gb|DN219627.1|DN219627
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|9255093|gb|BE345561.1|BE345561
EST:     CTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: CTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|37397315|gb|CF635954.1|CF635954
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|60355362|gb|DN222335.1|DN222335
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211308607|gb|FL359637.1|FL359637
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211262500|gb|FL327821.1|FL327821
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|60396956|gb|DN229775.1|DN229775
EST:     ATGTCAGTCCTGAGGCAAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: ATGTCAGTCCTGAAGC-AAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211260993|gb|FL365787.1|FL365787
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211439886|gb|FL309186.1|FL309186
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGAC-AGGAAGA
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGA
EST: gi|60349587|gb|DN216560.1|DN216560
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211374992|gb|FL316972.1|FL316972
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|29946407|gb|CB816135.1|CB816135
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211314169|gb|FL331838.1|FL331838
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211154101|gb|FL335997.1|FL335997
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|5915417|gb|AW053058.1|AW053058
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211041714|gb|FL025837.1|FL025837
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211406874|gb|FL447487.1|FL447487
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211467080|gb|FL315617.1|FL315617
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|71311933|gb|DR792459.1|DR792459
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|37394639|gb|CF634595.1|CF634595
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|60357813|gb|DN224786.1|DN224786
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211430944|gb|FL367566.1|FL367566
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|29130370|gb|CB381074.1|CB381074
EST:     GTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: GTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211475326|gb|FL336903.1|FL336903
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|60394900|gb|DN227769.1|DN227769
EST:     CTCTTTGTGGTCCGCATCCGGGG                         TATTAATGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: CTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|60352160|gb|DN219133.1|DN219133
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|71439147|gb|DR820197.1|DR820197
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|19058687|gb|BM737354.1|BM737354
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|31611990|gb|CD568612.1|CD568612
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|60354480|gb|DN221453.1|DN221453
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|29544066|gb|CB604446.1|CB604446
EST:     CAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: CAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|31558661|gb|CD527873.1|CD527873
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|28873880|gb|CB329810.1|CB329810
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|60348516|gb|DN215489.1|DN215489
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211427800|gb|FL348316.1|FL348316
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211401347|gb|FL317344.1|FL317344
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|60399439|gb|DN232251.1|DN232251
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211419805|gb|FL340213.1|FL340213
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|93016887|gb|EB642407.1|EB642407
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|50323404|gb|CO518530.1|CO518530
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|101392068|gb|EB817961.1|EB817961
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|76281808|gb|DV021376.1|DV021376
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|33094604|gb|CF054598.1|CF054598
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|5108253|gb|AI739966.1|AI739966
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|60348815|gb|DN215788.1|DN215788
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|9255094|gb|BE345562.1|BE345562
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211528037|gb|FL311006.1|FL311006
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211055938|gb|FL348468.1|FL348468
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|28909548|gb|CB330985.1|CB330985
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211489013|gb|FL325724.1|FL325724
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211108757|gb|FL337429.1|FL337429
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211397106|gb|FL357146.1|FL357146
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|28910315|gb|CB331377.1|CB331377
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|9731382|gb|BE510134.1|BE510134
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|120480075|gb|EH210722.1|EH210722
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|31359055|gb|CD443412.1|CD443412
EST:     TTCTATGTCAGTCCTGAGGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|101401382|gb|EB822368.1|EB822368
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211430817|gb|FL361882.1|FL361882
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|28930957|gb|CB334318.1|CB334318
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211364904|gb|FL335329.1|FL335329
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATT
EST: gi|211099200|gb|FL356880.1|FL356880
EST:     TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGG                         TATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCT
genomic: TTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 937

GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1208

GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 550

GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 288

GAGAAGGAACTGGTGCAGCTTAAGCGTGAGGCCCGTTTGAAGGGTGGTTTCTATGTCAGTCCTGAAGCAAAGCTGCTCTTTGTGGTCCGCATCCGGGGgtgagtctca ... gaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacagaggatgaatttgtatgcttatgctgttttccatttctgttgaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG
           aatttgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtctcaggttcatatgccagtattttacagaggatgaatttgtatgcttatgctgttttccatttctgttgaaactacagTATTAACGCCATGCACCCTAAGACCAGGAAGATCTTGCAGCTTCTGCGATTGAGGCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT