1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtttttttatggacccatggtcatgccatgtgtttcttctctttcagcgatcaagtatttttatctgtttgatttggttagtactcattattgactgattttattcttggcagTTACTATACTGAAATTTGGCCGTGCAAATTCTGATCTGCTTGCATATGGTGCGGCAGATGGCAGCTTGATGGTCTGCCAGGTTTCTGAGCCACCATCTGT
species | Zea mays |
transcript | GRMZM2G093239_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATACTCATTTGTTGGAGTGCACTGCATCTTTGACAACTGCAAAGCCTCAG TTACTATACTGAAATTTGGCCGTGCAAATTCTGATCTGCTTGCATATGGTGEST: gi|148967841|gb|EE019134.2|EE019134
genomic: ATACTCATTTGTTGGAGTGCACTGCATCTTTGACAACTGCAAAGCCTCAGgtttttttat ... ttcttggcagTTACTATACTGAAATTTGGCCGTGCAAATTCTGATCTGCTTGCATATGGTG
EST: ATACTCATTTGTTGGAGTGCACTGCATCTTTGACAACTGCAAAGCCTCAG TTACTATACTGAAATTTGGCCGTGCAAATTCTGATCTGCTTGCATATGGTGEST: gi|148986431|gb|EE030173.2|EE030173
genomic: ATACTCATTTGTTGGAGTGCACTGCATCTTTGACAACTGCAAAGCCTCAGgtttttttat ... ttcttggcagTTACTATACTGAAATTTGGCCGTGCAAATTCTGATCTGCTTGCATATGGTG
EST: ATACTCATTTGTTGGAGTGCACTGCATCTTTGACAACTGCAAAGCCTCAG TTACTATACTGAAATTTGGCCGTGCAAATTCTGATCTGCTTGCATATGGTG
genomic: ATACTCATTTGTTGGAGTGCACTGCATCTTTGACAACTGCAAAGCCTCAGgtttttttat ... ttcttggcagTTACTATACTGAAATTTGGCCGTGCAAATTCTGATCTGCTTGCATATGGTG
ttttatctgtttgatttggttagtactcattattgactgattttattcttggcagTTACTATACTGAAATTTGGCCGTGCAAATTCTGATCTGCTTGCATATGGTGCGGCAGATGGCAGCTTGATGGTCTGCCAGGTTTCTGAGCCACCATCTGT
ttttattctt CT-rich tract
attttattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttttatggacccatggtcatgccatgtgtttcttctctttcagcgatcaagtatttttatctgtttgatttggttagtactcattattgactgattttattcttggcagTTACTATACTGAAATTTGGCCGTGCAAATTCTGATCTGCTTGCATATGGTGCGGCAGATGGCAGCTTGATGGTCTGCCAGGTTTCTGAGCCACCATCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT