Sequence
atgc intronic sequence ATGC exonic sequence...ataaaacaatatttctgacagtgatacttattcgtttaggaacttatgtaatgatgaaacagaagctcactcttattaatctctttgttttaccttgcagTGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCGTACTTGTTACTCCTCTAGGAGCTCTAAGCATCATATTTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G092991_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os02g29510.1 (Oryza sativa), 3'ss of exon 3
ataaaacaatatttctgacagtgatacttattcgtttaggaacttatgtaatgatgaaacagaagctca----ctcttattaatctctttgttttaccttgcagTGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCGTACTTGTTACTCCTCTAGGAGCTCTAAGCATCATATTTAG
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---aatcaacatactggatactgatacttagatgtgaaccaatatttgtgat-atgaaccggaagctcaaacgttattcctaatcatcttgttttaccttgcagTGATTCTGGGCGAGGTAGCAAACTTTGCAGCATATGCATTTGCTCCCGCTGTACTTGTTACTCCTCTAGGAGCTCTTAGCATTATATTTAG
upper sequence: GRMZM2G092991_T03 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA05G28580.1 (Glycine max), 3'ss of exon 3
ataaaacaatatttctgacagtgatacttattcgtttaggaacttatgtaatgatgaaacagaagctcactcttattaatctctttgt---tttac---cttgcagTGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCGTACTTGTTACTCCTCTAGGAGCTCTAAGCATCATATTTAG
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------tagtactcttataactataaataactaatttgctaatgtccgcgacaatcttatgaaaatttcatcaactaattctatatgtatgcttacatttttgtagTGATTGTTGGGGAAGTAGCCAATTTTGCAGCTTATGCATTTGCTCCTGCACTACTTGTAACTCCTTTGGGAGCTTTAAGTATCATTTTCAG
upper sequence: GRMZM2G092991_T03 (Zea mays), 3'ss of exon 2
lower sequence: AT4G13800.1 (Arabidopsis thaliana), 3'ss of exon 2
ataaaacaatatttctgacagtgatacttattcgtttaggaacttatgtaatgatgaaacagaagctcactcttattaatctctttgtttta--ccttgcagTGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCGTACTTGTTACTCCTCTAGGAGCTCTAAGCATCATATTTAG
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ttgggacatgttttggaatccaagtttctattggattt--aatcaatggacatcaaactttggttatgataactaatattgtattcatactaattcttatagTGATTGTTGGGGAGATAGCCAATTTTGCAGCATATGCATTTGCACCGGCTATTCTAGTAACACCTTTGGGAGCTTTAAGTATTATTTTCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211343937|gb|FL065656.1|FL065656EST: AGGCTTCTCATATCTATATGAGCCGTTATGGTGGTTGGGAATGATAACTA TGATTCTAGGCGAGGTAGCCA
genomic: AGGCTTCTCATATCTATATGAGCCGTTATGGTGGTTGGGAATGATAACTAgtaagtgtca ... taccttgcagTGATTCTAGGCGAGGTAGCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atgtaatgatgaaacagaagctcactcttattaatctctttgttttaccttgcagTGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCGTACTTGTTACTCCTCTAGGAGCTCTAAGCATCATATTTAG
tattaat putative branch site (score: 2)
tctctttgttttacct CT-rich tract
ttattaatctcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ataaaacaatatttctgacagtgatacttattcgtttaggaacttatgtaatgatgaaacagaagctcactcttattaatctctttgttttaccttgcagTGATTCTAGGCGAGGTAGCCAATTTTGCAGCATATGCATTTGCCCCTGCCGTACTTGTTACTCCTCTAGGAGCTCTAAGCATCATATTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT