ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...cttaatccgtagttgctgcaaattagcttttatcttcaaatactgaaactttcattggcaatgtttgtttaacttttatcatgacacatgaaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA

Basic information

species	Zea mays
transcript	GRMZM2G092975_T01
intron #	3
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G092975_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g43570.1 (Oryza sativa), 3'ss of exon 4

cttaatccgtagttgctgcaaattagcttttatcttcaaatactgaaactttcatt---ggcaatgtttgtttaacttttatcatgacacatgaaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA
 |   |  |   ||  |  | |      || || ||  | ||   ||   ||   |   ||  | |||| | |||||||| ||  || ||||| ||  |||||||| || ||||| || |||||||| || || |||||||||||||| ||||| |  |||||||||||||| ||||||||| | ||||||||
-tctctgtgctattagtaaacagctttcttcattttgtattatacaattattgggttaggggtaagtttatctaacttttttc--gatacatggaaaattcagATTTGGACCATACTTCTGCCAGCCTGTTATCGCTGGACTTGGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAA

upper sequence: GRMZM2G092975_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA06G11930.1 (Glycine max), 3'ss of exon 1

--cttaatccgtagttgctgcaaattagctt--ttatcttcaaatactgaaactttcattggcaatgtttgtttaacttttatcatgacacatgaaact---------ttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA
   | ||||  | || | | |  |||||  |  |||| ||  | |  |  |  |   ||   |||| | | ||| |  | | | |  ||| || | |||         ||||| || || ||||| ||||||||||| || ||||||||||| ||||||||  ||   ||||| ||||| || |||||   | | || |||||
gtatcaatcaattgt-gtttcggattaggctaattatgtttgatt-ttatagatgatatgcacaat-tctattttatgtatgtaaaaacaaattacactgttttgcctttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGACAAGCCATTCATTTGCACAATGGATGCCATTGGAGCAAA

upper sequence: GRMZM2G092975_T01 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA04G42830.1 (Glycine max), 3'ss of exon 1

---cttaatccgtagttgctgcaaatta---gcttttatcttcaaatactgaaactttcattggcaatgtttgtttaacttttatcatgacacatgaaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA
      ||||      || | |  ||||    |||||||    | ||    |  | |   |      | |   | |||    |      |  | |     |||||| || || ||||| ||||||||||| || ||||||||||| ||||||||  ||  |||||| ||||| || |||||   | | || |||||
gtatccaatcaaattctgtttcggattatgcacttttatagatagatgac-atgcataattctattttatcactctaaaaactgaatacattcttttgcatttcagGTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGACAAACCATTCATTTGCACAATGGATGCCATTGGAGCAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|50328691|gb|CO523817.1|CO523817

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|37377268|gb|CF625223.1|CF625223

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGTTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|37378530|gb|CF625957.1|CF625957

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|47962777|gb|CN845486.1|CN845486

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|211069213|gb|FL305343.1|FL305343

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|4887391|gb|AI677490.1|AI677490

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|211071940|gb|FL305347.1|FL305347

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|211071943|gb|FL305350.1|FL305350

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|113703164|gb|EE680668.1|EE680668

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|211071946|gb|FL305353.1|FL305353

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|50328692|gb|CO523818.1|CO523818

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|71329112|gb|DR801265.1|DR801265

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTTTTTGCGCTCCTTTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|67017133|gb|CO445882.1|CO445882

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|148965852|gb|EE016749.2|EE016749

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|78180178|gb|DV550551.1|DV550551

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|148965851|gb|EE016748.2|EE016748

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTTTGCGCTCCTTTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|71329114|gb|DR801266.1|DR801266

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|71759696|gb|DR957633.1|DR957633

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTTTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|6827536|gb|AW331179.1|AW331179

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGNNCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|4573353|gb|AI586912.1|AI586912

EST:     CCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: CCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|113701140|gb|EE678644.1|EE678644

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCANNNNNNNGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|67016388|gb|CO445137.1|CO445137

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|67022320|gb|CO451069.1|CO451069

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|67041562|gb|CO467817.1|CO467817

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|91877573|gb|EB407530.1|EB407530

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|50323661|gb|CO518787.1|CO518787

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|67028880|gb|CO457629.1|CO457629

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|37380700|gb|CF627177.1|CF627177

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|211071942|gb|FL305349.1|FL305349

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|71438822|gb|DR819872.1|DR819872

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|76909375|gb|DV163351.1|DV163351

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|12046147|gb|BF728286.1|BF728286

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGGCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|71303012|gb|DR787617.1|DR787617

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|148973855|gb|EE024997.2|EE024997

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTTTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|37393439|gb|CF633984.1|CF633984

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|40336492|gb|CK370562.1|CK370562

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|78107042|gb|DV525460.1|DV525460

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|211071941|gb|FL305348.1|FL305348

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|148973856|gb|EE024998.2|EE024998

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|50323660|gb|CO518786.1|CO518786

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|32845428|gb|CD985109.1|CD985109

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|211071944|gb|FL305351.1|FL305351

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|116823354|gb|EC866875.1|EC866875

EST:     AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: AAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

EST: gi|37381438|gb|CF627606.1|CF627606

EST:     TGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAG                         ATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA
genomic: TGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 598

GGTTGGTGTTCAGGCACAAGCTGTATCAGCTGCGGGAGGAGAGGGACATGAAGCCCGAGACCTTTGCCAGCCTTGTCTCTGCGCTCCTCTACGAGAAGAGgtgagaattt ... aaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 480

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 464

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 514

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

aaactttcattggcaatgtttgtttaacttttatcatgacacatgaaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA

                     gtttaac  putative branch site (score: 514)
                                                ctttc  putative PPT
                  tttgtttaacttttat  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttaatccgtagttgctgcaaattagcttttatcttcaaatactgaaactttcattggcaatgtttgtttaacttttatcatgacacatgaaactttcagATTCGGGCCATATTTTTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTTATTTGTACTATGGACTGCTTAGGTGCAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - -gttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
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