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gtgccgtgtagctaacccggcgccggtgcccgcgtctcactcaccttcgatccgtgacttctgtgcttgtgatgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGCGTCGCCGGACGCCGCCAAGCATCACATCGGTGCG
species | Zea mays |
transcript | GRMZM2G092776_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAG GTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGAATGGAGGAGACGGCCGEST: gi|149008583|gb|EE040762.2|EE040762
genomic: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAGgtgccgtgta ... tgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGA-TGGAGGAGACGGCCG
EST: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAG GTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGGCGCEST: gi|148967634|gb|EE018890.2|EE018890
genomic: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAGgtgccgtgta ... tgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGC
EST: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGTCCCGTCTTCAG GTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGCEST: gi|74240503|gb|DT648417.1|DT648417
genomic: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAGgtgccgtgta ... tgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGC
EST: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAG GTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGCEST: gi|149106667|gb|EE188561.2|EE188561
genomic: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAGgtgccgtgta ... tgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGC
EST: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAG GTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGCEST: gi|211251350|gb|FL249389.1|FL249389
genomic: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAGgtgccgtgta ... tgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGC
EST: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAG GTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGCEST: gi|149094696|gb|EE180247.2|EE180247
genomic: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAGgtgccgtgta ... tgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGC
EST: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAG GTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGCEST: gi|148979722|gb|EE026796.2|EE026796
genomic: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAGgtgccgtgta ... tgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGC
EST: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAG GTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGCEST: gi|76284885|gb|DV024453.1|DV024453
genomic: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAGgtgccgtgta ... tgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGC
EST: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAG GTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGCEST: gi|149005261|gb|EE039808.2|EE039808
genomic: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAGgtgccgtgta ... tgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGC
EST: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAG GTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGCEST: gi|74233199|gb|DT641113.1|DT641113
genomic: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAGgtgccgtgta ... tgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGC
EST: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAG GTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGCEST: gi|50325911|gb|CO521037.1|CO521037
genomic: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAGgtgccgtgta ... tgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGC
EST: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAG GTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGC
genomic: GCCGGCCTCTGGACGCACGATTCCCGCGGCCTCCTCCGCCCCGTCTTCAGgtgccgtgta ... tgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGC
gcccgcgtctcactcaccttcgatccgtgacttctgtgcttgtgatgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGCGTCGCCGGACGCCGCCAAGCATCACATCGGTGCG
cactcac putative branch site (score: 13)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccgtgtagctaacccggcgccggtgcccgcgtctcactcaccttcgatccgtgacttctgtgcttgtgatgtgctatagGTTCCTGGAGATCGAGCCCAAGGCATGGGCGGGGATGGAGGAGACGGCCGCGTCGCCGGACGCCGCCAAGCATCACATCGGTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA