1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatacctccagagttacctgagaaaaccctttaatatttcttgccactttccttctagaatcctagccttacgcttctcattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTGTCAAGCTCGAAGATATTGAT
species | Zea mays |
transcript | GRMZM2G092468_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|211056131|gb|FL465294.1|FL465294
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: CGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|18165330|gb|BM335169.1|BM335169
genomic: CGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|211387542|gb|FL169282.1|FL169282
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|211087643|gb|FL395856.1|FL395856
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|32788605|gb|CD940841.1|CD940841
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TAAAGATGCTCAGCAAACT ATGACTGCGATGAAGACTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|32843415|gb|CD983096.1|CD983096
genomic: TAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: GCGGCCGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|211439056|gb|FL385005.1|FL385005
genomic: GCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|211056133|gb|FL465296.1|FL465296
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: CTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|32850682|gb|CD990363.1|CD990363
genomic: CTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|32844108|gb|CD983789.1|CD983789
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTATGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|32843203|gb|CD982884.1|CD982884
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: GCGGCCGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|13562177|gb|BG550397.1|BG550397
genomic: GCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|5928953|gb|AW056245.1|AW056245
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|87151661|gb|DY396450.1|DY396450
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|32908604|gb|CF013417.1|CF013417
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|32844472|gb|CD984153.1|CD984153
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TGACCAAGCTGCTTTTGCGGCAGAAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|24934372|gb|CA452590.1|CA452590
genomic: TGACCAAGTTGCTTTTGCGGCAG-AGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|22489538|gb|BU049461.1|BU049461
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|32830794|gb|CD970472.1|CD970472
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: GACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|211211675|gb|FL370026.1|FL370026
genomic: GACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACEST: gi|211387544|gb|FL169284.1|FL169284
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAAC
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|211406647|gb|FL439010.1|FL439010
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|17970239|gb|BM277003.1|BM277003
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|32843530|gb|CD983211.1|CD983211
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: GACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|71437048|gb|DR818098.1|DR818098
genomic: GACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|18168644|gb|BM338484.1|BM338484
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: ACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|32916309|gb|CF021121.1|CF021121
genomic: ACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|211394823|gb|FL369347.1|FL369347
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|32863022|gb|CF002704.1|CF002704
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|211408542|gb|FL414508.1|FL414508
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCNAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGGAAACTEST: gi|32831503|gb|CD971181.1|CD971181
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: GACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|76286967|gb|DV026535.1|DV026535
genomic: GACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|32843474|gb|CD983155.1|CD983155
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: GCGGCCGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTEST: gi|211434160|gb|FL401089.1|FL401089
genomic: GCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAEST: gi|211387541|gb|FL169281.1|FL169281
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAA
EST: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACT ATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
genomic: TTGACCAAGTTGCTTTTGCGGCAGAGGGACTTAAAGATGCTCAGCAAACTgtatacctcc ... cattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACT
atatttcttgccactttccttctagaatcctagccttacgcttctcattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTGTCAAGCTCGAAGATATTGAT
gccttac putative branch site (score: 227)
cttctcatt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacctccagagttacctgagaaaaccctttaatatttcttgccactttccttctagaatcctagccttacgcttctcattggacagATGACTGCGATGAAGGCTGCCAATAAAGAGCTCAAAGGGATGATGAAAACTGTCAAGCTCGAAGATATTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA