1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtagatctgtcaacaattttctccattatccatcttttgctgtgcactccaaaagcacccaacgatttttgttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAGACTGGGAAGATGCGACACCACTAATGAAAGAATTGGAATTTAAACCTA
species | Zea mays |
transcript | GRMZM2G092131_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGT-T-----G ----ATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|89252045|gb|DY623831.1|DY623831
genomic: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGTATATCTCGgtagatctgt ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGT-T-----G ----ATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|71441696|gb|DR831412.1|DR831412
genomic: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGTATATCTCGgtagatctgt ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGT-T-----G ----ATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|101390617|gb|EB817243.1|EB817243
genomic: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGTATATCTCGgtagatctgt ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGT-T-----G ----ATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|71771111|gb|DR969048.1|DR969048
genomic: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGTATATCTCGgtagatctgt ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGT-T-----G ----ATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|71435233|gb|DR816283.1|DR816283
genomic: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGTATATCTCGgtagatctgt ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGT-T-----G ----ATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|101398534|gb|EB821140.1|EB821140
genomic: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGTATATCTCGgtagatctgt ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGT-T-----G ----ATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|93015506|gb|EB641026.1|EB641026
genomic: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGTATATCTCGgtagatctgt ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGTATATCTCG GTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|76932735|gb|DV173138.1|DV173138
genomic: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGTATATCTCGgtagatctgt ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGT-T-----G ----ATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAEST: gi|149077854|gb|EE166581.2|EE166581
genomic: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGTATATCTCGgtagatctgt ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
EST: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGT-T-----G ----ATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
genomic: CTTGGCTACCTTCAATGATTTTGAAGTCGAAGCTCTCCAAGTATATCTCGgtagatctgt ... ttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCA
tatccatcttttgctgtgcactccaaaagcacccaacgatttttgttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAGACTGGGAAGATGCGACACCACTAATGAAAGAATTGGAATTTAAACCTA
tttttgttgttttc CT-rich tract
atttttgttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagatctgtcaacaattttctccattatccatcttttgctgtgcactccaaaagcacccaacgatttttgttgttttcagGTTGATGATGCTATTTGGGTTGCACAAAAGGCTAAAAGTGCCATAAAATCAGACTGGGAAGATGCGACACCACTAATGAAAGAATTGGAATTTAAACCTA
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