1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...acaaaatattctgtaataaaattgagaagttgttcctgcctctgaacatattctgtacctcatcggacttgcagaattaatatttaactgtttgctgcagGTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAA
species | Zea mays |
transcript | GRMZM2G092129_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAG GTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAAEST: gi|149103443|gb|EE288836.2|EE288836
genomic: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAGgttggcagca ... tttgctgcagGTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAA
EST: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAG GTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTEST: gi|211162016|gb|FL219543.1|FL219543
genomic: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAGgttggcagca ... tttgctgcagGTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCT
EST: TGTGCGNTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAG GTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAAEST: gi|148971559|gb|EE022272.2|EE022272
genomic: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAGgttggcagca ... tttgctgcagGTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAA
EST: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAG GTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAAEST: gi|74241137|gb|DT649051.1|DT649051
genomic: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAGgttggcagca ... tttgctgcagGTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAA
EST: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAG GTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAAEST: gi|71331353|gb|DR802511.1|DR802511
genomic: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAGgttggcagca ... tttgctgcagGTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAA
EST: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAG GTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAAEST: gi|211162015|gb|FL219542.1|FL219542
genomic: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAGgttggcagca ... tttgctgcagGTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAA
EST: GTGYKKNTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAG GTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAAEST: gi|211162018|gb|FL219545.1|FL219545
genomic: GTGCGG-TGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAGgttggcagca ... tttgctgcagGTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAA
EST: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAG GTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAAEST: gi|211162017|gb|FL219544.1|FL219544
genomic: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAGgttggcagca ... tttgctgcagGTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAA
EST: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAG GTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAA
genomic: TGTGCGGTGATAACTTCCCGGAGTGGATATCCTTCCCGCAGTTTGAGCAGgttggcagca ... tttgctgcagGTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAA
acatattctgtacctcatcggacttgcagaattaatatttaactgtttgctgcagGTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAA
atttaac putative branch site (score: 3)
agaattaatatttaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaaatattctgtaataaaattgagaagttgttcctgcctctgaacatattctgtacctcatcggacttgcagaattaatatttaactgtttgctgcagGTTAAATGGTTGAACAAGCATCTGAGCAAACTTTGGCCTTTTGTTGTAGAA
acaaaata
- - - - - - - aataaaa
- - - - - - - - - - - - - - - - -tcctgcc
- - - - - - - - - - - - - - - - - - - - -ctgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttgca