1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttcatttaaacttgatctcaaaggtatgtgcacttatctatgtactttccaaatttgcctaagttttgtacttttgttatcatatttgtttatttgaagATGGTATCCTGCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGA
species | Zea mays |
transcript | GRMZM2G092120_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTTGATGTAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATG ATGGTATCCTGCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTEST: gi|211358802|gb|FL192105.1|FL192105
genomic: GTTTGATATAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATGgtgagctgtg ... ttatttgaagATGGTATCCTGCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACT
EST: GTTTGATGTAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATG ATGGTATCCTGCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACT
genomic: GTTTGATATAATACATTGCTCACGCTGCCGAATAAATTGGACCCGTGATGgtgagctgtg ... ttatttgaagATGGTATCCTGCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACT
ctttccaaatttgcctaagttttgtacttttgttatcatatttgtttatttgaagATGGTATCCTGCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGA
tttgttt CT-rich tract
tacttttgttatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcatttaaacttgatctcaaaggtatgtgcacttatctatgtactttccaaatttgcctaagttttgtacttttgttatcatatttgtttatttgaagATGGTATCCTGCTCCTGGAGGTTAATAGATTGCTTAGAGCTGGAGGCTACTTTGCTTGGGCAGCCCAACCTGTTTATAAGCATGAAGAGGCCCAACAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
tttcatt
- - - - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgtt