ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract

Sequence

atgc intronic sequence ATGC exonic sequence

gtatgcgcacttgcattcatctgactgttgtgtctaatattactgcgcatttggaatgtggggatttcattgtgtttctgtggttctgataaaaaaatagttattttttgcgtgtaactgctaatttttttgttggattggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTAGCCGTCTTGAGTTCGAGTAACACCTGTTCGCCGTCAGAAATTTTGTACC

Basic information

species	Zea mays
transcript	GRMZM2G091383_T01
intron #	3
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G091383_T01 (Zea mays), 3'ss of exon 3
lower sequence: AT3G04920.1 (Arabidopsis thaliana), 3'ss of exon 4

gtatgcgcacttgcattcatctgactgttgtgtctaatattactgcgcatttggaatgtggggatttcattgtgtttctgtggttctgataaaaaaatagttattttttgcgtgtaactgctaattt-----ttttgttggattggt-tttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTAGCCGTCTTGAGTTCGAGTAACACCTGTTCG-CCGTCAGAAATTTTGTACC
                                                                      | ||| |    | ||    |      ||  |   ||||||  ||| ||||    |||     | |  || |||   | |||||||||||||||||| || ||||||||||| ||||         || | |  ||   | |  || ||||  ||    | |  ||   |  |    || || |   
---------------------------------------------------------------------gtatgtatactggttttccctcttgctatcttctgtttttgattgtgactgtagctttaagaatctgttttgatcaatgtttgcagACAAAGGCTGGTGATGCCAAGAAGAAGTGAGATCCTGAAGAGAGAATCTTTATC-TTGTGGGTTCTTGTTCTCCATAATCAATCACCTTTTATGTTATTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211244227|gb|FL117664.1|FL117664

EST:     AGATGAAGGAGAGGAAGAATAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|37399539|gb|CF637099.1|CF637099

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|113580284|gb|DW745348.1|DW745348

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTG
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTG

EST: gi|60347596|gb|DN214569.1|DN214569

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|60353470|gb|DN220443.1|DN220443

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|166530814|gb|EG245827.1|EG245827

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTG
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTG

EST: gi|149102995|gb|EE288355.2|EE288355

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|8516244|gb|BE122972.1|BE122972

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|113703592|gb|EE681096.1|EE681096

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|60396565|gb|DN229434.1|DN229434

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|211318855|gb|FL135405.1|FL135405

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|32797048|gb|CD949284.1|CD949284

EST:     GATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: GATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|29543354|gb|CB603750.1|CB603750

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|211244232|gb|FL117669.1|FL117669

EST:     AGATGAAGGAGAGGAAGAACAGGGCTAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCTAAGAAGAAATGAGCAAGGTTTCAGTGGTACTTT
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTG-TACTTT

EST: gi|12970877|gb|BG267203.1|BG267203

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|29945877|gb|CB815865.1|CB815865

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCA-GAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|29543674|gb|CB604054.1|CB604054

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|32913480|gb|CF018292.1|CF018292

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|71426587|gb|DR807637.1|DR807637

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|29946931|gb|CB816396.1|CB816396

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|8516654|gb|BE123379.1|BE123379

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|211244221|gb|FL117658.1|FL117658

EST:     GATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCCGCG-TGTGAAGAAG                         ACAAAGGCTGGGGACGCTAAGAAGAAATGAGCANGGTTTCAGTGTACTTTA
genomic: GATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCC-GCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|60357475|gb|DN224448.1|DN224448

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|211316843|gb|FL135403.1|FL135403

EST:     AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

EST: gi|109179434|gb|EC379989.1|EC379989

EST:     AGATGAAGGAGAGGAAGAATAGGGCGAAGAAGATCCGCGGTGTGAAGAAG                         ACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA
genomic: AGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 198

AACGGTCTTGCTACCAAGGTGGAGAAGTCGCGCAAGCAGATGAAGGAGAGGAAGAACAGGGCGAAGAAGATCCGCGGTGTGAAGAAGgtatgcgcac ... ggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTAGCCGTCTTGAGTTCGAGTAACACCTGTTCGCCGTCAGAAATTTTGTACC

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 285

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 279

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 210

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

aaatagttattttttgcgtgtaactgctaatttttttgttggattggttttgcagACAAAGGCTGGGGACGCCAAGAAGAAATGAGCAAGGTTTCAGTGTACTTTAGCCGTCTTGAGTTCGAGTAACACCTGTTCGCCGTCAGAAATTTTGTACC