1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taacttgttaacaatgtaattttgtttctgttatttgtatgatgttattgttcttctttattaccatttttattagttatccaacttttaactcttgtagGTTCCATCCGTCTTGTATGGGAATGACCATTGAGCAAGCAAAAAAGATAGATCATTACATGTGCTCGGATTGTGCTAAAGAAAATGGTGCAAAGAGACCC
species | Zea mays |
transcript | GRMZM2G091265_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGAGCCTTATGCTCCTGTGTTTGCTTGGTCCTTATGTAAGATATATATG GTTCCATCCGTCTTGTATGGGAATGACCATTGAGCAAGCAAAAAAGATAGAEST: gi|78090599|gb|DV518973.1|DV518973
genomic: TAGAGCCTTATGCTCCTGTGTTTGCTTGGTCCTTATGTAAGATATATATGgtattcacta ... actcttgtagGTTCCATCCGTCTTGTATGGGAATGACCATTGAGCAAGCAAAAAAGATAGA
EST: TAGAGCCTTATGCTCCTGTGTTTGCTTGGTCCTTATGTAAGATATATATG GTTCCATCCGTCTTGTATGGGAATGACCATTGAGNCA-GCAAAAAAGATAG
genomic: TAGAGCCTTATGCTCCTGTGTTTGCTTGGTCCTTATGTAAGATATATATGgtattcacta ... actcttgtagGTTCCATCCGTCTTGTATGGGAATGACCATTGAG-CAAGCAAAAAAGATAG
tattgttcttctttattaccatttttattagttatccaacttttaactcttgtagGTTCCATCCGTCTTGTATGGGAATGACCATTGAGCAAGCAAAAAAGATAGATCATTACATGTGCTCGGATTGTGCTAAAGAAAATGGTGCAAAGAGACCC
ttttaac putative branch site (score: 2)
ctcttgt CT-rich tract
ttctttattaccattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacttgttaacaatgtaattttgtttctgttatttgtatgatgttattgttcttctttattaccatttttattagttatccaacttttaactcttgtagGTTCCATCCGTCTTGTATGGGAATGACCATTGAGCAAGCAAAAAAGATAGATCATTACATGTGCTCGGATTGTGCTAAAGAAAATGGTGCAAAGAGACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA