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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaaatgaatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC

Basic information

species Zea mays
transcript GRMZM2G091119_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 3'ss of exon 3
--gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaaatgaatttctcatca----gctttgtaattc--ttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
  || ||   |   ||||| |   | ||   ||| |        || |||||| |||| | |       |||||  ||||   |||||||||||||||| || ||||| || ||||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||||| || ||||||||||||||||
gtgtgtgccaacacaatattattttcattatctggtaggttcaaataaaaatggatttattactgtggtgcttttgaattaaattttgtagTTCGAAGCTGCGTGGGCACTTACAAACATTGCATCTGGCACTTCGGAGAATACAAAGGTTGTCATTGATCATGGGGCTGTACCAATATTTGTGAAGCTTC

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA09G04430.1 (Glycine max), 3'ss of exon 3
------gtatgttgatttaatataaaccttatatcctgt-tgttgctggatgaaaatgaatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
       | | ||   |  ||   ||  || | |   || |  || ||     |  ||   |  | ||  | | | |  || |||  ||||| || || || |||||||||||||| || || ||||| ||||| || ||||| ||||| || |||||||||||||| ||||| |||||||| ||||| |
gttttgttttattccctgcattggaagtttttgtgtggtgtagtgttgatgacatttgttgtgttgattggttctttgtttgtttgctagTTTGAGGCTGCGTGGGCTCTCACAAACATAGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCAGTTCCGATATTTGTCAAGCTAC

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA17G03430.1 (Glycine max), 3'ss of exon 3
----gtatgttgatttaatataaaccttatatcctgttgtt---gctggatgaaaatgaatttctcatcagctttgtaattcttttgt--agTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
    | |||    |||  | |  | ||||| |  | ||  |   | |||||    || | |   | ||     ||||  ||  |||||  |||| || || || |||||||||||||| ||||| ||||| ||||| || || || ||||| || |||||||||||||| |||||||||||||| ||||| |
gtttgaatgccttttttcttttcatcttatttgtttttccttgtggtggatattcattagtaatttatgtcacttgttgtttgtttgtttagTTTGAGGCTGCGTGGGCTCTCACAAACATTGCATCTGGGACTTCTGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTTCCTATATTTGTCAAGCTAC

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA07G37180.1 (Glycine max), 3'ss of exon 4
----gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaa---atgaatttctcatcagctttgtaattcttt-tgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
    | ||     |||  | |  | ||||| |  | ||  |  |||  || |   || | ||  | ||     |||   || ||| | ||||| || || || |||||||||||||| ||||| ||||| ||||| || || || ||||| || |||||||| ||||| |||||||||||||| ||||| |
gtttgaattcctttttgctttgcatcttatttgtttttccttgtggtagatattcattagttatttatgtcacttgcttttgtttgtttagTTTGAGGCTGCGTGGGCTCTCACAAACATTGCATCTGGGACTTCTGAGAACACTAAGGTGGTAATTGATCACGGGGCAGTTCCTATATTTGTCAAGCTAC

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA15G15480.1 (Glycine max), 3'ss of exon 3
------gtatgttgatttaatataaaccttatatcctgttgttgc-tggatgaaaatgaatttctc-atcagctttgtaattcttttgt-agTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
       | | ||   |  || |  |  || ||   |  ||| |  | ||||  | |   | | |  ||  | | | |  || ||| || |||| || || || ||||||||||| || ||||| ||||| ||||| || ||||| ||||| || |||||||||||||| || || |||||||| || || |
gttttgctctattccctgcat-tggaagttttagtgtagtgtagtgtagatgggatttgttgtgttgattggttctttgtttgtttggttagTTTGAGGCTGCGTGGGCTCTCACGAACATTGCATCTGGAACTTCTGAGAATACCAAGGTGGTGATTGATCATGGGGCGGTGCCGATATTTGTCAAACTAC

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA03G39210.1 (Glycine max), 3'ss of exon 4
---------gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaaatgaatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
          |   ||| |||| | ||     |  ||    || |   ||  |    ||    ||  | |    |||| | || | |||||||| || ||||| |||||| | |||||||| |||||||| || || ||||| || |||||  | ||||||||||| ||||| || || ||||| ||||| |
gtttgttatctgccttgttttactttatgtaatcaatatatttatctttgcttatttatagccttgactttg--tttg-atttttgttgtagTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACATCTGAAAACACTAAGGTGATAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTAC

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA19G41770.1 (Glycine max), 3'ss of exon 3
gtatgttgatt-taatataaaccttatatcct-gttgttgctggatgaaaatgaatttctcatcagctttgt--aattctt-ttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
|| ||||   |    | |  || |||| |  | | | |   |   |     |   | | || |   ||||||  |||  || |||||||| || ||||| |||||| | |||||||| |||||||| ||||| ||||| || ||||| || ||||||||||| ||||| || || ||||| ||||| |
gtttgttatctgccttgtttactttatttaatcgatatatttatctttgcttatttatttccttgactttgtttaatgtttgttgtagTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACTTCTGAAAACACCAAGGTGGTAATTGATCATGGTGCTGTCCCAATTTTTGTAAAGCTCC

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA10G29000.1 (Glycine max), 3'ss of exon 3
gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaaatgaatttctcatcagctttgtaattc---ttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
       | ||  || |     || | |  |    ||  ||  |  ||    | || |  | |  |||||   |    | ||| |||| || ||||| |||||| | |||||||| |||||||| || || ||||| ||||||||||| |||||||| |||||||| || || || |||||||| |
-------gtttgtatttgtctgttttgtttttgaattagtgatttcaatgttacttatggtgatgtttgtctattgcatgttgcagTTTGAGGCAGCTTGGGCTTTGACAAATATAGCTTCTGGAACGTCTGAAAACACAAAGGTTGTGATTGATCACGGGGCTGTCCCAATTTTCGTGAAGCTAC

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: AT4G16143.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatgttgatttaatataaacct--tatatcctgttgttgctggatgaaaatg--aatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
|| || ||  |   |||  | ||   ||||  || |     ||  |    ||   |||| ||  |  | | |||   |  |||  |||| || || || |||||  | ||||| ||||||||||| |||||||| ||||||||||| || ||||| ||||| |||||||| || |||||  | ||  
gtttggtggatcgttatgtatctgtcatattttgctagaattgtcttctgatactaattacttgtgtg-tgtgtgtgtgattt-cagTTTGAGGCTGCTTGGGCATTGACAAACATTGCTTCTGGGACTTCAGAGAATACAAAGGTGGTCATTGAACATGGTGCTGTTCCGATTTTTGTTCAACTAT

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 3'ss of exon 3
gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaaatgaatttctcatcagctttg-taattc------ttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
|||||||    ||   |    | |   |  |    |      ||  | ||||  || |||   | |||| | |||       |  ||||||| ||||||||||||||||||||||| ||||||||||| || || || || || ||||| || ||||||||||||||||| ||  | |||||||| ||||
gtatgttatgataccctccctcatggcttttaaattattcatattgatatgatattttcagacgatttgattatttgaaaaatcctgtagTTTGAAGCAGCATGGGCTCTCACAAACATTGCTTCTGGGACATCTGACAACACTAAGGTGGTAATTGATCATGGGGCTGTCCCGGTGTTTGTGAAACTTC

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv07s0005g01100.t01 (Vitis vinifera), 3'ss of exon 3
-------gtatgttgatttaatataaaccttatatcctgttgt-tgctggatgaaaatgaatttctcatcagctttgtaattc-------------ttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
        || | || |||| |       ||| ||||  ||   ||  | ||  | |||   | ||| |  | ||||| |||              || | ||||| || || || |||||||||||||| ||||||||||| || |||||||| || |||||||| || |||||||| || ||||| || |||||||||||||
gtttgaactaggctg-tttattcctgtttttagatccatttaaatgaagcatttatatg--ctcctcttttgttttgttatttactgatttgaattttatttagTTTGAGGCTGCTTGGGCTCTCACAAACATTGCTTCTGGAACATCAGAAAACACCAAGGTTGTAATAGATCATGGAGCAGTTCCGATTTTTGTGAAGCTTC

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: Vv05s0077g01430.t01 (Vitis vinifera), 3'ss of exon 3
-------------gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaaatgaatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
              | ||||   ||  | |     |  || |   ||  |  |   |  || |   | | |||  |      | | | || | ||||| || ||||| |||||||||||||| ||||||||||| || ||||||||||| ||||| || ||||||||||| || || || |||||||||||||| |
gtttgggattgttctttgttacattgttgtttggttattagcagttttgtagtttgtttaagtacttatttcaataatggcttcaattttgtctagTTTGAGGCAGCTTGGGCTCTCACAAACATTGCTTCTGGGACATCAGAAAATACCAAGGTGGTAATTGATCATGGAGCAGTGCCAATATTTGTGAAGCTAC

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ38593 (Selaginella moellendorffii), 3'ss of exon 3
gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaaatgaatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
                ||  ||  || |  | |  |||| |  |     ||  |   | ||  |  || ||||      | |||||||||| || |||||||| ||||||||||| || |||||||| ||  | || | ||| |||||  | ||||| ||||| ||||| || ||| ||||||
---------------gtatgccc-attttttttccttgcggtgtt----tgggtcgttaataggagttttaatga----gcagTTCGAAGCTGCCTGGGCTCTTACAAATATTGCGTCCGGCACTTCCGATCACACGACGGTGGTTATAAACCATGGAGCTGTGCCTATCTTCGTGCAGCTTC

upper sequence: GRMZM2G091119_T02 (Zea mays), 3'ss of exon 3
lower sequence: EFJ31557 (Selaginella moellendorffii), 3'ss of exon 3
gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaaatgaatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
                ||  ||   | |  | |  |||| |  |     ||  |   | ||  |  || ||||      | |||||||||| || |||||||| ||||||||||| || |||||||| ||  | || | ||| |||||  | ||||| ||||| ||||| || ||| ||||||
---------------gtatgcccatttttttttccttgcggtgtt----tgggtcgttaataggagttttaatga----gcagTTCGAAGCTGCCTGGGCTCTTACAAATATTGCGTCCGGCACTTCCGATCACACGACGGTGGTTATAAACCATGGAGCTGTGCCTATCTTCGTGCAGCTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211097395|gb|FL161930.1|FL161930
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211099883|gb|FL161954.1|FL161954
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|148930623|gb|EE285320.2|EE285320
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211097397|gb|FL161932.1|FL161932
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAA
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAA
EST: gi|211094918|gb|FL161916.1|FL161916
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAA-T
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|149036989|gb|EE155227.2|EE155227
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|26457325|gb|CA828908.1|CA828908
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211097396|gb|FL161931.1|FL161931
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211089988|gb|FL161899.1|FL161899
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211099874|gb|FL161945.1|FL161945
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211092450|gb|FL161908.1|FL161908
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCAC
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCAC
EST: gi|211092445|gb|FL161903.1|FL161903
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211094925|gb|FL161923.1|FL161923
EST:     TCCCAGATTTGTGCAGTTGCTCACCAGAGAAGGATT-GCCCCAGCTGCAG                         TTCGAAGCAACATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TCCAAGATTTGTGCAGTTGCTCACAAGAGA-GGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|22521415|gb|BU080226.1|BU080226
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211094923|gb|FL161921.1|FL161921
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAA
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAA
EST: gi|211097403|gb|FL161938.1|FL161938
EST:     TTCCCAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAA
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAA
EST: gi|211097405|gb|FL161940.1|FL161940
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGC
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGC
EST: gi|211089987|gb|FL161898.1|FL161898
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211092453|gb|FL161911.1|FL161911
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211099881|gb|FL161952.1|FL161952
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211092447|gb|FL161905.1|FL161905
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|89252976|gb|DY624762.1|DY624762
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211097407|gb|FL161942.1|FL161942
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|149015249|gb|EE045043.2|EE045043
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211099875|gb|FL161946.1|FL161946
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211094919|gb|FL161917.1|FL161917
EST:     TTCCCAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCCTCACAA-TATTGCTTCTGGCACTTCAGAAAA
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTC-TCACAAATATTGCTTCTGGCACTTCAGAAAA
EST: gi|149067410|gb|EE286973.2|EE286973
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211092451|gb|FL161909.1|FL161909
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211097406|gb|FL161941.1|FL161941
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211092454|gb|FL161912.1|FL161912
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAA
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAA
EST: gi|211094926|gb|FL161924.1|FL161924
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211099880|gb|FL161951.1|FL161951
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211092455|gb|FL161913.1|FL161913
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|211094922|gb|FL161920.1|FL161920
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|148982771|gb|EE028594.2|EE028594
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: gi|148931614|gb|EC874737.2|EC874737
EST:     TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG                         TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 335

AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 121

AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 113

AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 131

AGAGGAGCCCTCCCATTGAAGAAGTTATCAAATCAGGTGTAGTTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgttgttgctggatgaaaatgaatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
                                            ttcttttgt  CT-rich tract
              atgaaaatgaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaaatgaatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC