1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaaatgaatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
species | Zea mays |
transcript | GRMZM2G091119_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211099883|gb|FL161954.1|FL161954
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|148930623|gb|EE285320.2|EE285320
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211097397|gb|FL161932.1|FL161932
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAEST: gi|211094918|gb|FL161916.1|FL161916
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAA
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAA-TEST: gi|149036989|gb|EE155227.2|EE155227
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|26457325|gb|CA828908.1|CA828908
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211097396|gb|FL161931.1|FL161931
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211089988|gb|FL161899.1|FL161899
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211099874|gb|FL161945.1|FL161945
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211092450|gb|FL161908.1|FL161908
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACEST: gi|211092445|gb|FL161903.1|FL161903
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCAC
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211094925|gb|FL161923.1|FL161923
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TCCCAGATTTGTGCAGTTGCTCACCAGAGAAGGATT-GCCCCAGCTGCAG TTCGAAGCAACATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|22521415|gb|BU080226.1|BU080226
genomic: TCCAAGATTTGTGCAGTTGCTCACAAGAGA-GGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211094923|gb|FL161921.1|FL161921
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAEST: gi|211097403|gb|FL161938.1|FL161938
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAA
EST: TTCCCAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAEST: gi|211097405|gb|FL161940.1|FL161940
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAA
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCEST: gi|211089987|gb|FL161898.1|FL161898
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGC
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211092453|gb|FL161911.1|FL161911
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211099881|gb|FL161952.1|FL161952
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211092447|gb|FL161905.1|FL161905
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|89252976|gb|DY624762.1|DY624762
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211097407|gb|FL161942.1|FL161942
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211099873|gb|FL161944.1|FL161944
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|149015249|gb|EE045043.2|EE045043
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211099875|gb|FL161946.1|FL161946
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211094919|gb|FL161917.1|FL161917
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCCAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCCTCACAA-TATTGCTTCTGGCACTTCAGAAAAEST: gi|149067410|gb|EE286973.2|EE286973
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTC-TCACAAATATTGCTTCTGGCACTTCAGAAAA
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211092451|gb|FL161909.1|FL161909
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211097406|gb|FL161941.1|FL161941
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211092454|gb|FL161912.1|FL161912
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAEST: gi|211094926|gb|FL161924.1|FL161924
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAA
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211099880|gb|FL161951.1|FL161951
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211092455|gb|FL161913.1|FL161913
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|211094922|gb|FL161920.1|FL161920
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|148982771|gb|EE028594.2|EE028594
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATEST: gi|148931614|gb|EC874737.2|EC874737
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
EST: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAG TTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
genomic: TTCCAAGATTTGTGCAGTTGCTCACAAGAGAGGATTTGCCCCAGCTGCAGgtatgttgat ... tcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAAT
cctgttgttgctggatgaaaatgaatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
ttcttttgt CT-rich tract
atgaaaatgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttgatttaatataaaccttatatcctgttgttgctggatgaaaatgaatttctcatcagctttgtaattcttttgtagTTCGAAGCAGCATGGGCTCTCACAAATATTGCTTCTGGCACTTCAGAAAATACAAAGGTTGTTATTGATCATGGGGCTGTTCCTATATTTGTGAAGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC