1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatatacattctggtgcatcatgaactggatataaaattatataatatagctatatatttaaagagtcacttatgctatttatatttaattcaaatccagGGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTTTCCATCAAAAGTGACGAAGAACAGTCAAATGGTGAGAGTGCAAAGCCTCGAAAAGTTGGC
species | Zea mays |
transcript | GRMZM2G090935_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATGAGTCTCGCTCATCTTCCGTGGATGCAACATTGCTGGATGACTCCAA GGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTTTCCATCAAAAGEST: gi|60356905|gb|DN223878.1|DN223878
genomic: AATGAGTCTCGCTCATCTTCCGTGGATGCAACATTGCTGGATGACTCCAAgtaaattgct ... tcaaatccagGGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTTTCCATCAAAAG
EST: ATGAGTCTCGCTCATCTTCCGTGGATGCAACATTGCNTGGATGACTCCAA GGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTTTCCATCAAAAGEST: gi|37383092|gb|CF628527.1|CF628527
genomic: ATGAGTCTCGCTCATCTTCCGTGGATGCAACATTGC-TGGATGACTCCAAgtaaattgct ... tcaaatccagGGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTTTCCATCAAAAG
EST: AATGAGTCTCGCTCATCTTCCGTGGATGCAACATTGCTGGATGACTCCAA GGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTTTCCATCAAAAGEST: gi|148964662|gb|EC905944.2|EC905944
genomic: AATGAGTCTCGCTCATCTTCCGTGGATGCAACATTGCTGGATGACTCCAAgtaaattgct ... tcaaatccagGGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTTTCCATCAAAAG
EST: AATGAGTCTCGCTCATCTTCCGTGGATGCAACATTGCTGGATGACTCCAA GGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTTEST: gi|50333362|gb|CO528488.1|CO528488
genomic: AATGAGTCTCGCTCATCTTCCGTGGATGCAACATTGCTGGATGACTCCAAgtaaattgct ... tcaaatccagGGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTT
EST: AATGAGTCTCGCTCATCTTCCGTGGATGCAACATTGCTGGATGACTCCAA GGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTTTCCATCAAAAG
genomic: AATGAGTCTCGCTCATCTTCCGTGGATGCAACATTGCTGGATGACTCCAAgtaaattgct ... tcaaatccagGGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTTTCCATCAAAAG
tatagctatatatttaaagagtcacttatgctatttatatttaattcaaatccagGGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTTTCCATCAAAAGTGACGAAGAACAGTCAAATGGTGAGAGTGCAAAGCCTCGAAAAGTTGGC
atttaat putative branch site (score: 53)
acttatgctatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatacattctggtgcatcatgaactggatataaaattatataatatagctatatatttaaagagtcacttatgctatttatatttaattcaaatccagGGAGAAAAGGAAAACTCAAAAGCCATTAGCACAGCTCTTTTCCATCAAAAGTGACGAAGAACAGTCAAATGGTGAGAGTGCAAAGCCTCGAAAAGTTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - ctggtgc
- - - - - - - - - -catgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatgc