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...ttacgttttcaatactcctctttgcttacatggttgtattctttgcagaatacatgtttctttcttagtagatgtatctaaagtgttcttgcatttttagGTTGATATATTCAGAGATGCTGCAGTGCTTATGGTGAATTATGTCGATGAAATTCGAGCACAAGGTTTTAAGTTGGAGTACCTGAATATTGGAGGTGGTT
species | Zea mays |
transcript | GRMZM2G090722_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAATCAAACTCGTTGGTGTTCATTGCCATCTGGGATCTACTATTACAAAG GTTGATATATTCAGAGATGCTGCAGTGCTTATGGTGAATTATGTCGATGAAEST: gi|148964387|gb|EC905763.2|EC905763
genomic: AAATCAAACTCGTTGGTGTTCATTGCCATCTGGGATCTACTATTACAAAGgtaatgttaa ... gcatttttagGTTGATATATTCAGAGATGCTGCAGTGCTTATGGTGAATTATGTCGATGAA
EST: AAATCAAACTCGTTGGTGTTCATTGCCATCTGGGATCTACTATTACAAAG GTTGATATATTCAGAGATGCTGCAGTGCTTATGGGGAATTATGTCGAEST: gi|148982703|gb|EE028519.2|EE028519
genomic: AAATCAAACTCGTTGGTGTTCATTGCCATCTGGGATCTACTATTACAAAGgtaatgttaa ... gcatttttagGTTGATATATTCAGAGATGCTGCAGTGCTTATGGTGAATTATGTCGA
EST: GAATCAAACTCGTTGGTGTTCATTGCCATCTGGGATCTACTATTACAAAG GTTGATATATTCAGAGATGCTGCAGTGCTTATEST: gi|149059656|gb|EE156999.2|EE156999
genomic: AAATCAAACTCGTTGGTGTTCATTGCCATCTGGGATCTACTATTACAAAGgtaatgttaa ... gcatttttagGTTGATATATTCAGAGATGCTGCAGTGCTTAT
EST: AAATCAAACTCGTTGGTGTTCATTGCCATCTGGGATCTACTATTACAAAG GTTGATATATTCAGAGATGCTGCAGTGCTTATGGTGAATTATGTCGATGAA
genomic: AAATCAAACTCGTTGGTGTTCATTGCCATCTGGGATCTACTATTACAAAGgtaatgttaa ... gcatttttagGTTGATATATTCAGAGATGCTGCAGTGCTTATGGTGAATTATGTCGATGAA
cagaatacatgtttctttcttagtagatgtatctaaagtgttcttgcatttttagGTTGATATATTCAGAGATGCTGCAGTGCTTATGGTGAATTATGTCGATGAAATTCGAGCACAAGGTTTTAAGTTGGAGTACCTGAATATTGGAGGTGGTT
atctaaa putative branch site (score: 128)
ttcttgc putative PPT
attttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacgttttcaatactcctctttgcttacatggttgtattctttgcagaatacatgtttctttcttagtagatgtatctaaagtgttcttgcatttttagGTTGATATATTCAGAGATGCTGCAGTGCTTATGGTGAATTATGTCGATGAAATTCGAGCACAAGGTTTTAAGTTGGAGTACCTGAATATTGGAGGTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - tgcttac
- - - - - - - - - - - - - - -atggttg
- - - - - - - - - - - - - - - - - - - - ctttgca