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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagactgttatttgaggttagagatgttgttgttgagatcttgtgtcaagtatgttctcatacaatatgtgatgtatttttctcttttttccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG

Basic information

species Zea mays
transcript GRMZM2G090087_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G090087_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g45960.1 (Oryza sativa), 3'ss of exon 3
----cagactgttatttgaggttaga-gatgttgttgt-----tgagatcttgtgtcaagtatgttctcatacaatatgtgatgtatttttctcttttttccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG
     |   |  |||||    ||||  ||| ||  |||     ||  ||||  | | |||  | | ||||  |||  ||             | |||||| |  ||  ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
tgactacggttatatttagacttagttgatattactgtgaatctgttatctgctctgaagcgtatcctcaggcaacgtgca----------ttttttttttccggtgcagCCATTTGTAGAGAGTTTATCTAATTGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211124834|gb|FL408235.1|FL408235
EST:     CGGTGATAAATTCATCAAAGGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: CGGTGATAAATTCATCAAAG-TTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|60339011|gb|DN205984.1|DN205984
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211306987|gb|FL381273.1|FL381273
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211108216|gb|FL373163.1|FL373163
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211484357|gb|FL369749.1|FL369749
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|28422609|gb|CB251943.1|CB251943
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211082384|gb|FL402151.1|FL402151
EST:     CGGTGATAAATTCATCAAAGTTGCTTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: CGGTGATAAATTCATCAAAGTTGCT-GAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|149071327|gb|EE159720.2|EE159720
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211017676|gb|FL418607.1|FL418607
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTNCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCC
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATT-CGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCC
EST: gi|211332403|gb|FL404941.1|FL404941
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211336214|gb|FL371115.1|FL371115
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|148958687|gb|EC904955.2|EC904955
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|60346857|gb|DN213830.1|DN213830
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211219293|gb|FL379956.1|FL379956
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGG
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGG
EST: gi|211451569|gb|FL371208.1|FL371208
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211431745|gb|FL408447.1|FL408447
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211266997|gb|FL420589.1|FL420589
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211521606|gb|FL412480.1|FL412480
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211535838|gb|FL377068.1|FL377068
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTYATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211204247|gb|FL383416.1|FL383416
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|8367516|gb|BE050461.1|BE050461
EST:     CGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACCAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: CGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAAC-AGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211112947|gb|FL390931.1|FL390931
EST:     CGGNGATAAATTCATCAAAGTTGCTGAGGTTCAGGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: CGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGG-AACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|60399068|gb|DN231882.1|DN231882
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211278595|gb|FL376807.1|FL376807
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211533298|gb|FL400243.1|FL400243
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|94472231|gb|EB701189.1|EB701189
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211384979|gb|FL400571.1|FL400571
EST:     CGGTGATAAATTCATCAAAGTTGCTTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: CGGTGATAAATTCATCAAAGTTGCT-GAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211390609|gb|FL418018.1|FL418018
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211087311|gb|FL378409.1|FL378409
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211059652|gb|FL374524.1|FL374524
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211261878|gb|FL409707.1|FL409707
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCAC
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCAC
EST: gi|211097512|gb|FL395914.1|FL395914
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211410539|gb|FL375656.1|FL375656
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211337034|gb|FL418406.1|FL418406
EST:     CGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: CGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGG-AACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211387597|gb|FL400573.1|FL400573
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211254108|gb|FL390493.1|FL390493
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCC
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCC
EST: gi|211434782|gb|FL426801.1|FL426801
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|27522050|gb|CA989156.1|CA989156
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211524408|gb|FL405472.1|FL405472
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211069274|gb|FL419947.1|FL419947
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGG
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGG
EST: gi|211156670|gb|FL403860.1|FL403860
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211003075|gb|FL395295.1|FL395295
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211309737|gb|FL424540.1|FL424540
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
EST: gi|211214281|gb|FL374170.1|FL374170
EST:     ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAG                         CCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA
genomic: ACGGTGATAAATTCATCAAAGTTGCTGAGGTTCAGGGAACAGAAATAAAGgtatgcttag ... ccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaagtatgttctcatacaatatgtgatgtatttttctcttttttccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG
                           tgtatttttctctttt  CT-rich tract
                             tatttttctctttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cagactgttatttgaggttagagatgttgttgttgagatcttgtgtcaagtatgttctcatacaatatgtgatgtatttttctcttttttccttgtatagCCATTCGTGGAGAGTTTATCTAAATGCCCAAAGCATGGACTTCACAACCCACTTAAAGCTCCAGAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA