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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtccttattaacaaggctggaagctgaaggagttgtaaagctagtattccctttgcatggtacactaatcttaattctatttatgctcatatttgtgaaactattattgtataccaactaacaattccgttgcagATGAAATTAAAAGGAAGCAACTCCTGAGAAATTGGGCGCTTAATTGGCTTGACTTCACATGGCAGCCTATCGATGAGATTTACTCCTATTTTGGAACAAA

Basic information

species Zea mays
transcript GRMZM2G089553_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G089553_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os01g51040.1 (Oryza sativa), 3'ss of exon 4
gtgagtccttattaacaaggctggaagctgaaggagttgtaaagctagtattccctttgcatggtacactaatcttaattctatttatgctcatatttgtgaaactattattgtataccaactaacaattccgttgcagATGAAATTAAAAGGAAGCAACTCCTGAGAAATTGGGCGCTTAATTGGCTTGACTTCACATGGCAGCCTATCGATGAGATTTACTCCTATTTTGGAACAAA
                                                               ||| || || || ||||              |||| ||||| | ||| | |     ||| |||  ||  | |||||||||||||||||||||||||||||||||||  ||||| || || ||| |||| ||||||||||| ||||| ||||| |||||||| || |||||||||||
---------------------------------------------------------------gtaaaccaacctgaatt--------------atttttgaaattcttagtattagataaccaactgttttgctgcagATGAAATTAAAAGGAAGCAACTCCTGAGAAGCTGGGCACTCAAGTGGTTTGATTTCACATGGCAACCTATTGATGAAATTTACTCTTACTTTGGAACAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgctcatatttgtgaaactattattgtataccaactaacaattccgttgcagATGAAATTAAAAGGAAGCAACTCCTGAGAAATTGGGCGCTTAATTGGCTTGACTTCACATGGCAGCCTATCGATGAGATTTACTCCTATTTTGGAACAAA
                                   aactaac  putative branch site (score: 1)
                                            ttccgtt  putative PPT
                 aaactattattgtata  TA-rich tract