1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactatgttctttggagttcttttccccttttgcatgcaagtgtggtgtaggatgcatcttacctgtcgtcataagtaacatgtgggagttctctggcacttatacctatcctctctgtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCCCCATTCCTCCCCGTGTTCTAACAGGCTGTCGTGAGAAG
species | Zea mays |
transcript | GRMZM2G088212_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCEST: gi|211372725|gb|FK987862.1|FK987862
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCEST: gi|31355364|gb|CD439721.1|CD439721
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|51592848|gb|CV071994.1|CV071994
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACCTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|8367869|gb|BE050814.1|BE050814
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|6563780|gb|AW231312.1|AW231312
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: AACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|213172790|gb|FM182986.1|FM182986
genomic: AACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAACAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|83278461|gb|DV942469.1|DV942469
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|51592345|gb|CV071491.1|CV071491
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|44681843|gb|CK786891.1|CK786891
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTEST: gi|33770839|gb|CF273133.1|CF273133
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTT
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCEST: gi|44681821|gb|CK786869.1|CK786869
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAEST: gi|45567401|gb|CK985553.1|CK985553
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCC-TTCGAGGTTTGATCCCGCCCGTCACGCGGAGAA
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|60348828|gb|DN215801.1|DN215801
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: TGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|60357381|gb|DN224354.1|DN224354
genomic: TGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|8930216|gb|BE224980.1|BE224980
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAACAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|31350569|gb|CD434926.1|CD434926
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGTATAAGGTCEST: gi|8366919|gb|BE049927.1|BE049927
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCAGAGAAGGTCEST: gi|31250271|gb|CD219295.1|CD219295
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAEST: gi|13237225|gb|BG355239.1|BG355239
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGA
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|83279341|gb|DV943349.1|DV943349
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|60342963|gb|DN209936.1|DN209936
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: CACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCEST: gi|38502631|gb|CF972491.1|CF972491
genomic: CACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
EST: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAG GTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
genomic: ACAATAACCACCATGATGGGTTCATGAACTTCATGCACAGGGACGAAGAGgtactatgtt ... gtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTC
taagtaacatgtgggagttctctggcacttatacctatcctctctgtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCCCCATTCCTCCCCGTGTTCTAACAGGCTGTCGTGAGAAG
aagtaac putative branch site (score: 2)
tacctatcctctctgt putative PPT
acttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactatgttctttggagttcttttccccttttgcatgcaagtgtggtgtaggatgcatcttacctgtcgtcataagtaacatgtgggagttctctggcacttatacctatcctctctgtttccttagGTGAACTACTTCCCTTCGAGGTTTGATCCCGCCCGTCACGCGGAGAAGGTCCCCATTCCTCCCCGTGTTCTAACAGGCTGTCGTGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA