Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgttggatgccttcaagtgacccaatttttagaacactttattgacctttttatatccagagggatagtatcttatggttttcttcatgcgttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATGGGATGAAATTCCCTGACATGGTCCACGCTTTCAAGCCGAATCCAAAGA

Basic information

species Zea mays
transcript GRMZM2G088212_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088212_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os06g51150.1 (Oryza sativa), 3'ss of exon 3
tgttggatgccttcaagtgacccaatttttagaacactttattgacctttttatatccagagggatagtatcttatggttttcttcatgcgt-tttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATGGGATGAAATTCCCTGACATGGTCCACGCTTTCAAGCCGAATCCAAAGA
| |   |    |   |   ||  | ||| |   ||  |||||| ||   |||  || ||| |      ||| ||    ||||||   |   |  |||||||||||| ||||| || || || ||||| |||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||| | ||||||||
tatctaaccagtgtcacctaca-actttgtcttactgtttatttactgatttgcattcagtgctgccatattttgatattttctgagtcaatgcttttcagGGTAATTTTGATCTTGTTGGGAACAATATGCCTGTCTTTTTTATCCGAGATGGGATGAAATTCCCTGACATGGTCCATGCTTTCAAGCCAAGTCCAAAGA

upper sequence: GRMZM2G088212_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ37039 (Selaginella moellendorffii), 3'ss of exon 3
tgttggatgccttcaagtgacccaatttttagaacactttattgacctttttatatccagagggatagtatcttatggttttcttcatgcgtttttt--cagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATGGGATGAAATTCCCTGACATGGTCCACGCTTTCAAGCCGAATCCAAAGA
                ||||   || | |  |   |  ||  | |  |    |        |  ||   |||||    |||| |   |  ||||     ||||| ||||| || || || || |||||||| || ||||| ||| |||| ||||| || || |||||||||||| |||||||| ||||||| || |||||||
----------------gtgagtaaactatctggtgatgttgctaagttggacac-------gaaattccatctttgacttttttcgctttgtttgcgagcagGGAAACTTCGATCTGGTTGGAAACAACATTCCCGTGTTCTTCGTACGTGATGGCATCAAGTTCCCTGACATGATCCACGCTCTCAAGCCAAACCCAAAGA

upper sequence: GRMZM2G088212_T02 (Zea mays), 3'ss of exon 2
lower sequence: EFJ33688 (Selaginella moellendorffii), 3'ss of exon 3
tgttggatgccttcaagtgacccaatttttagaacactttattgacctttttatatccagagggatagtatcttatggttttcttcatgcgtttttt--cagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATGGGATGAAATTCCCTGACATGGTCCACGCTTTCAAGCCGAATCCAAAGA
                ||||   || | |  |  ||  ||  | |  |    |        |  ||   |||||    |||| |   |  ||||     ||||| ||||| || || || || |||||||| || ||||| ||| |||| ||||| || || |||||||||||| |||||||| ||||||| || |||||||
----------------gtgagtaaactatctggtcatgttgctaagttggacac-------gaaattccatctttgacttttttcgctttgtttgcgagcagGGAAACTTCGATCTGGTTGGAAACAACATTCCCGTGTTCTTCGTACGTGATGGCATCAAGTTCCCTGACATGATCCACGCTCTCAAGCCAAACCCAAAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67028432|gb|CO457181.1|CO457181
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211021126|gb|FK987898.1|FK987898
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211375391|gb|FK987876.1|FK987876
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211375400|gb|FK987885.1|FK987885
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGNCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211023549|gb|FK987906.1|FK987906
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211375395|gb|FK987880.1|FK987880
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211372728|gb|FK987865.1|FK987865
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211021125|gb|FK987897.1|FK987897
EST:     GACCTTGAGGGATCCACGTGGTTTTGCTGTCAAAGT-CTACACCAGAGAA                         GGTAACTTTTGACCTCGTGGGTAACAACATGCCTGGTGTTTTTCATACGAG
genomic: GACCTTGAGGGATCCACGTGGTTTTGCTGTCAA-GTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTT-GACCTCGTGGGTAACAACATGCCTG-TGTTTTTCATACGAG
EST: gi|33771001|gb|CF273295.1|CF273295
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|32862678|gb|CF002360.1|CF002360
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211372729|gb|FK987866.1|FK987866
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGGTAACA-CATGCCTGTGTTTTTC
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGG-TAACAACATGCCTGTGTTTTTC
EST: gi|38229587|gb|CF919900.1|CF919900
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211375401|gb|FK987886.1|FK987886
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGGTGTTTTTCATACGAGA
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTG-TGTTTTTCATACGAGA
EST: gi|37622130|gb|CF675183.1|CF675183
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211375397|gb|FK987882.1|FK987882
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211372735|gb|FK987872.1|FK987872
EST:     AGACCTTGAGGGATCCACGTGNTTTTGCTGTCAAGTTNTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTTCATACGAGA
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTT-CATACGAGA
EST: gi|211021123|gb|FK987895.1|FK987895
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAA                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|32920070|gb|CF024882.1|CF024882
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211021129|gb|FK987901.1|FK987901
EST:     AGACCTTGAGGGATCCACGNGNNTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATA
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATA
EST: gi|38229627|gb|CF919940.1|CF919940
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|37361299|gb|CF602588.1|CF602588
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|71442812|gb|DR823862.1|DR823862
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211021118|gb|FK987890.1|FK987890
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCCTGTGTTTTTCATACGAGA
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCC-TGTGTTTTTCATACGAGA
EST: gi|211023559|gb|FK987916.1|FK987916
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|31356065|gb|CD440422.1|CD440422
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACCAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|31353478|gb|CD437835.1|CD437835
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211375403|gb|FK987888.1|FK987888
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211375396|gb|FK987881.1|FK987881
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|33285619|gb|CF075414.1|CF075414
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211023553|gb|FK987910.1|FK987910
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211023556|gb|FK987913.1|FK987913
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211370083|gb|FK987860.1|FK987860
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|6626360|gb|AW257892.1|AW257892
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGNGGGTAACAACATGCCTGTGTTTTTCATA
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATA
EST: gi|211023548|gb|FK987905.1|FK987905
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGT
EST: gi|33770680|gb|CF272974.1|CF272974
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211021122|gb|FK987894.1|FK987894
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACG
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACG
EST: gi|211370082|gb|FK987859.1|FK987859
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|211370080|gb|FK987857.1|FK987857
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|20811112|gb|BQ295590.1|BQ295590
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGAT
EST: gi|71442811|gb|DR823861.1|DR823861
EST:     AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGCTCTACACCAGAGAG                         GGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTTCATACGAGA
genomic: AGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTT-CATACGAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 323

ACCTGTTATTGTCCGTTTCTCTACAGTTGTGCATGAGCGTGGAAGCCCTGAGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATGGGATGAAATTCCCTGACATGGTCCACGCTTTCAAGCCGAATCCAAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 507

ACCTGTTATTGTCCGTTTCTCTACAGTTGTGCATGAGCGTGGAAGCCCTGAGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATGGGATGAAATTCCCTGACATGGTCCACGCTTTCAAGCCGAATCCAAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 476

ACCTGTTATTGTCCGTTTCTCTACAGTTGTGCATGAGCGTGGAAGCCCTGAGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATGGGATGAAATTCCCTGACATGGTCCACGCTTTCAAGCCGAATCCAAAGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 697

ACCTGTTATTGTCCGTTTCTCTACAGTTGTGCATGAGCGTGGAAGCCCTGAGACCTTGAGGGATCCACGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGgtactgagga ... gttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATGGGATGAAATTCCCTGACATGGTCCACGCTTTCAAGCCGAATCCAAAGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttttatatccagagggatagtatcttatggttttcttcatgcgttttttcagGGTAACTTTGACCTCGTGGGTAACAACATGCCTGTGTTTTTCATACGAGATGGGATGAAATTCCCTGACATGGTCCACGCTTTCAAGCCGAATCCAAAGA
                                            cgttttttc  CT-rich tract
                       tatcttat  TA-rich tract