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gtctgggaacagtagcactgatcaattatatggttttactttattttctctcttattaatcggtggcaatttgcgatatataacttatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACACTAAGGTGGTGGTTGAGAGTGGTGCTGTGCCCATCTTTGTCAAGCTAC
species | Zea mays |
transcript | GRMZM2G088088_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGEST: gi|88758378|gb|DY542747.1|DY542747
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGG
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|13558022|gb|BG549378.1|BG549378
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: CACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|211413307|gb|FL164847.1|FL164847
genomic: CACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|211376201|gb|FL253486.1|FL253486
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|211410763|gb|FL164838.1|FL164838
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|211410759|gb|FL164834.1|FL164834
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCA-CATTGCATCAGGCACATCAGAGAACEST: gi|211410766|gb|FL164841.1|FL164841
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|211008179|gb|FL253536.1|FL253536
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|211466268|gb|FL273959.1|FL273959
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCEST: gi|211468801|gb|FL273976.1|FL273976
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACEST: gi|211466274|gb|FL273965.1|FL273965
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|148943100|gb|EC888155.2|EC888155
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAEST: gi|211466276|gb|FL273967.1|FL273967
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGG-CACTCACCAACATTGCATCAGGCACATCAGAGAA
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGA-CEST: gi|211466277|gb|FL273968.1|FL273968
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|211468797|gb|FL273972.1|FL273972
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|29167750|gb|CB411010.1|CB411010
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|211466272|gb|FL273963.1|FL273963
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCC-AACTCCAG TTTGAAGCTGCATGGGCACTCACCAACATTGCATCAAGCACATCAGAGAACEST: gi|18053175|gb|BM318833.1|BM318833
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|91052953|gb|EB163371.1|EB163371
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCCTTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACTTTGCATCEST: gi|211466270|gb|FL273961.1|FL273961
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|67023557|gb|CO452306.1|CO452306
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|211466273|gb|FL273964.1|FL273964
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGGGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCEST: gi|211468798|gb|FL273973.1|FL273973
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|211008180|gb|FL253537.1|FL253537
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|78078677|gb|DV507089.1|DV507089
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|211413309|gb|FL164849.1|FL164849
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCAEST: gi|211468795|gb|FL273970.1|FL273970
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCA
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCEST: gi|18385029|gb|BM418228.1|BM418228
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|22489097|gb|BU049020.1|BU049020
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACEST: gi|5555266|gb|AI881217.1|AI881217
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAEST: gi|211331752|gb|FL022649.1|FL022649
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAA
EST: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAG TTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
genomic: TGCCGCGATTCATTGAGTTTCTTACACGTGAGGACCATCCCCAACTCCAGgtctgggaac ... tatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAAC
ttattttctctcttattaatcggtggcaatttgcgatatataacttatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACACTAAGGTGGTGGTTGAGAGTGGTGCTGTGCCCATCTTTGTCAAGCTAC
atatataacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgggaacagtagcactgatcaattatatggttttactttattttctctcttattaatcggtggcaatttgcgatatataacttatgctgcagTTTGAGGCTGCATGGGCACTCACCAACATTGCATCAGGCACATCAGAGAACACTAAGGTGGTGGTTGAGAGTGGTGCTGTGCCCATCTTTGTCAAGCTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT