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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacctaactgttgatttaaaagttcattgaaagtgcctttatctttcctttttttttcaaaaattatatagtccgttccaattatatttgtacccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTGACATTCTTCAGGGAG

Basic information

species Zea mays
transcript GRMZM2G088064_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G088064_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g25130.1 (Oryza sativa), 3'ss of exon 3
gtacctaactgttgatttaaaagttcattgaaagtgcctttatctttcctttttttttcaaaaattatatagtccgttccaattatatttgtacccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTGACATTCTTCAGGGAG
||   ||||| |  |||||| |      | || | ||              ||||  |   | ||||| |       ||  ||| | ||| | |||||||||||||| || |||||||||||||||||||| |||||||||||| | || || |||||||||||||||
gttagtaactatcaatttaaca------taaaggagc--------------ttttcctggtagattattt-------tctcattctgttt-tccccttgcagATCCTATACTGCAACATTGGGAATCCCCAGTCTCTTGGTCAGAAGCCAGTTACATTCTTCAGGGAG

upper sequence: GRMZM2G088064_T03 (Zea mays), 3'ss of exon 3
lower sequence: AT1G72330.3 (Arabidopsis thaliana), 3'ss of exon 3
-----------gtacctaactgttgatttaaaag-ttcattgaaagtgcctttatctttcctttttttttcaaaaa--ttatatagtccgttccaattatatttgtacccttg-cagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTGACATTCTTCAGGGAG
            |   || | |  | ||| |  | || ||    |||    |  |  |      | || |||||    || |  |      |   | |   |   |||  ||| |||||  |||||||||||||||||||||| ||||||||||||||||  ||| | |  |||||| | |||
gtaaaatctctttctttatcggcagttttgacggatttatgattagtttagtgttgatgttacctgttctcaaactctttgtgcaaggaacttagaattcttcattacttttggcagATAATCTATTGCAACATTGGGAATCCTCAATCTCTTGGTCAGCTGCCTATAAAGTTCTTCCGTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211264931|gb|FL212892.1|FL212892
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAATATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|28931250|gb|CB334611.1|CB334611
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211264933|gb|FL212894.1|FL212894
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211267361|gb|FL212903.1|FL212903
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAATATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|28566529|gb|CB278177.1|CB278177
EST:     GCCTGCGGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211262496|gb|FL212883.1|FL212883
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211269811|gb|FL212927.1|FL212927
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAATATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211264929|gb|FL212890.1|FL212890
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAATATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|67032116|gb|CO460865.1|CO460865
EST:     GCAGCAACAACTTC-CACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGATATCCCCAATCTCTTGGTCAGCAACCTGT
genomic: GCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGA-ATCCCCAATCTCTTGGTCAGCAACCTGT
EST: gi|6021176|gb|AW066104.1|AW066104
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211264934|gb|FL212895.1|FL212895
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211269800|gb|FL212916.1|FL212916
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAATATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211267358|gb|FL212900.1|FL212900
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAATATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|28566724|gb|CB278372.1|CB278372
EST:     GCCTGCAGCAACAGCTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211267360|gb|FL212902.1|FL212902
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211267369|gb|FL212911.1|FL212911
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|31627964|gb|CD526376.1|CD526376
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211267370|gb|FL212912.1|FL212912
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|18660149|gb|BM500711.1|BM500711
EST:     GCCTGCAGCAACAACTACAAACACAACCAGAGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAATATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|32861347|gb|CF001029.1|CF001029
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAATATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211269805|gb|FL212921.1|FL212921
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|31351417|gb|CD435774.1|CD435774
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211269809|gb|FL212925.1|FL212925
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAATATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211264926|gb|FL212887.1|FL212887
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211267368|gb|FL212910.1|FL212910
EST:     GCCTGCAGCAACAACTACNAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211264930|gb|FL212891.1|FL212891
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211262495|gb|FL212882.1|FL212882
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|28566505|gb|CB278153.1|CB278153
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|61117956|gb|DN558917.1|DN558917
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211267359|gb|FL212901.1|FL212901
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGKGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211269799|gb|FL212915.1|FL212915
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211267367|gb|FL212909.1|FL212909
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|62550611|gb|DN831031.1|DN831031
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGGATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211269808|gb|FL212924.1|FL212924
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211269803|gb|FL212919.1|FL212919
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211264923|gb|FL212884.1|FL212884
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|47962531|gb|CN845240.1|CN845240
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|8367753|gb|BE050698.1|BE050698
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAATATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|28187845|gb|CB179455.1|CB179455
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|213183626|gb|FM182350.1|FM182350
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAATATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|47961726|gb|CN844435.1|CN844435
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211267371|gb|FL212913.1|FL212913
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211269802|gb|FL212918.1|FL212918
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAATATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211269801|gb|FL212917.1|FL212917
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|47961863|gb|CN844572.1|CN844572
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211267366|gb|FL212908.1|FL212908
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|58029793|gb|CX725220.1|CX725220
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211267364|gb|FL212906.1|FL212906
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|33770580|gb|CF272874.1|CF272874
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|28188020|gb|CB179630.1|CB179630
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGNCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|67011132|gb|CO439881.1|CO439881
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|6564097|gb|AW231719.1|AW231719
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211269798|gb|FL212914.1|FL212914
EST:     GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTG
EST: gi|211264928|gb|FL212889.1|FL212889
EST:     GCCTGCAGCAACAACTACNAACACAACCAGGGTCTCTTCCTTTTGATGAG                         ATCCTCTATTGNCA-CATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGT
genomic: GCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTG-CAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 46 (downstream exon)
Score: 100

CGCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTGACATTCTTCAGGGAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 212

CGCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTGACATTCTTCAGGGAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 263

CGCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTGACATTCTTCAGGGAG


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 120

CGCCTGCAGCAACAACTACAAACACAACCAGGGTCTCTTCCTTTTGATGAGgtacctaact ... acccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTGACATTCTTCAGGGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttttttttcaaaaattatatagtccgttccaattatatttgtacccttgcagATCCTCTATTGCAACATTGGGAATCCCCAATCTCTTGGTCAGCAACCTGTGACATTCTTCAGGGAG
                                            taccctt  CT-rich tract
     ttttttcaaaaattat  TA-rich tract