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gtacatttcttaacctgaaccagtttatattgctatgcaaggtctctacaatggtcagttatatacataaagaataccttaactattgatagctggttaattattaccttttccttgcagtgtagGCTGGCGTTGCAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAA
species | Zea mays |
transcript | GRMZM2G087692_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|50328095|gb|CO523221.1|CO523221
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|87157627|gb|DY402416.1|DY402416
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|87157627|gb|DY402416.1|DY402416
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|101393422|gb|EB818643.1|EB818643
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|101393422|gb|EB818643.1|EB818643
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|89762249|gb|DY689931.1|DY689931
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|89762249|gb|DY689931.1|DY689931
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|71440891|gb|DR821941.1|DR821941
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: CCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|71440891|gb|DR821941.1|DR821941
genomic: C-TGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: CCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|22819976|gb|BU500066.1|BU500066
genomic: C-TGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|22819976|gb|BU500066.1|BU500066
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|78078319|gb|DV506734.1|DV506734
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG GCTGGCGTTGCAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAEST: gi|74241982|gb|DT649896.1|DT649896
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtagGCTGGCGTTGCAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGA
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|74241982|gb|DT649896.1|DT649896
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|26560078|gb|CA832313.1|CA832313
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|26560078|gb|CA832313.1|CA832313
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|26456098|gb|CA827681.1|CA827681
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|26456098|gb|CA827681.1|CA827681
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|93282992|gb|EB675256.1|EB675256
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG TEST: gi|93282992|gb|EB675256.1|EB675256
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
EST: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAG T
genomic: GCTGTCTTGGACTTCATTGGACAAATGATCTACCTGGAGCAATGATACAGgtacatttct ... tgcagtgtag-
agaataccttaactattgatagctggttaattattaccttttccttgcagtgtagGCTGGCGTTGCAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAA
ttattaccttttcctt CT-rich tract
ttaattattacctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatttcttaacctgaaccagtttatattgctatgcaaggtctctacaatggtcagttatatacataaagaataccttaactattgatagctggttaattattaccttttccttgcagtgtagGCTGGCGTTGCAACCTGATGGCCTTTTTCTGGCAGCAATTCTTGGTGGAGAAACACTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA