1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agaccaagatgtttatgaaagcgctcatactatttctactacagttttttttgtaataaaagtgccattataccaacgactgttaaatgttccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAAGCCTCAAGTGAGAGCCAATGGTATAGACGTGGCTACTTTCGCAGTTCC
species | Zea mays |
transcript | GRMZM2G087192_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|33098710|gb|CF058670.1|CF058670
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|91878868|gb|EB408825.1|EB408825
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|211046904|gb|FL342230.1|FL342230
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|33099068|gb|CF059028.1|CF059028
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|211434603|gb|FL306594.1|FL306594
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTATGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATTGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|211538244|gb|FL353979.1|FL353979
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: GGGATATTTTTSSTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|32828310|gb|CD967988.1|CD967988
genomic: GGGATATTTTTC-TGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA C-GTTCNAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAEST: gi|32844951|gb|CD984632.1|CD984632
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTC-AGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCC CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|71766717|gb|DR964654.1|DR964654
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|78110280|gb|DV528695.1|DV528695
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|13382053|gb|BG458728.1|BG458728
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: CACGTAGGGAGAGTCTCCAATTCCA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|33099221|gb|CF059181.1|CF059181
genomic: CACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|71769744|gb|DR967681.1|DR967681
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|211049230|gb|FL320166.1|FL320166
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|71448418|gb|DR829468.1|DR829468
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|31363471|gb|CD447828.1|CD447828
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|32844217|gb|CD983898.1|CD983898
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|32845504|gb|CD985185.1|CD985185
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|211086396|gb|FL335516.1|FL335516
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|76017395|gb|DT944565.1|DT944565
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|71431905|gb|DR812955.1|DR812955
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|211215728|gb|FL322479.1|FL322479
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|13382062|gb|BG458737.1|BG458737
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: TCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|33099127|gb|CF059087.1|CF059087
genomic: TCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CGTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAEST: gi|76281886|gb|DV021454.1|DV021454
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
EST: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCA CTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
genomic: AGGGATATTTTTCTGTCAGATTTGGCACGTAGGGAGAGTCTCCAATTCCAgtatgtttac ... tccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAA
tttttttgtaataaaagtgccattataccaacgactgttaaatgttccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAAGCCTCAAGTGAGAGCCAATGGTATAGACGTGGCTACTTTCGCAGTTCC
ttgtaataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaccaagatgtttatgaaagcgctcatactatttctactacagttttttttgtaataaaagtgccattataccaacgactgttaaatgttccaatgcagCTTTTCAGCCTAATGGGCAGGCTCCAATTTCAAGCACCGATAAGCCACTAAAGCCTCAAGTGAGAGCCAATGGTATAGACGTGGCTACTTTCGCAGTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaacga