1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttggccatttacgagaaagtaaagttttgttatgtggttattatgttatgctttgtgaacttttgttcatgtggattgatctttcatgttgtatctgcagCTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAG
species | Zea mays |
transcript | GRMZM2G087144_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCATTGAAGCAAGCATTACGGCTGAAGTTTGGCCCTTCCTACTAGGAGT CTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAEST: gi|50325323|gb|CO520449.1|CO520449
genomic: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTgtgagttact ... gtatctgcagCTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAA
EST: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT CTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAEST: gi|148959376|gb|EC905424.2|EC905424
genomic: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTgtgagttact ... gtatctgcagCTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAA
EST: GCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCCTTCCTACTAGGAGT CTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAEST: gi|211240371|gb|FL028807.1|FL028807
genomic: GCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCC-TTCCTACTAGGAGTgtgagttact ... gtatctgcagCTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAA
EST: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT CTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAEST: gi|148964953|gb|EE015802.2|EE015802
genomic: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTgtgagttact ... gtatctgcagCTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAA
EST: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT CTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAEST: gi|211328212|gb|FL409834.1|FL409834
genomic: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTgtgagttact ... gtatctgcagCTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAA
EST: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT CTATGATTTGAATAGCTCTGEST: gi|211240372|gb|FL028808.1|FL028808
genomic: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTgtgagttact ... gtatctgcagCTATGATTTGAATAGCTCTG
EST: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT CTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAEST: gi|149106092|gb|EE291756.2|EE291756
genomic: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTgtgagttact ... gtatctgcagCTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAA
EST: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT CTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAEST: gi|148981030|gb|EE027393.2|EE027393
genomic: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTgtgagttact ... gtatctgcagCTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAA
EST: GGCATTGAAGCCAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT CCATGATTTGAATAGCTCTGAAGAGGAAEST: gi|148939166|gb|EC883612.2|EC883612
genomic: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTgtgagttact ... gtatctgcagCTATGATTTGAATAGCTCTGAAGAGGAA
EST: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGT CTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAA
genomic: GGCATTGAAGCAAGCATTAGGGCTGAAGTTTGGCCCTTCCTACTAGGAGTgtgagttact ... gtatctgcagCTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAA
ttatgctttgtgaacttttgttcatgtggattgatctttcatgttgtatctgcagCTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAG
gattgat putative branch site (score: 31)
aactttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggccatttacgagaaagtaaagttttgttatgtggttattatgttatgctttgtgaacttttgttcatgtggattgatctttcatgttgtatctgcagCTATGATTTGAATAGCTCTGAAGAGGAAAGGAACTCTATCAAGATCAAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - -aaagtaaa
- - - - - - - - - - - - ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - tatgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtt