1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaccttcttgcctatgacctgtcacttcgcttctgtgtagtgcttcttccttagttccttagtttgtgtactggtataactgtctgtggcttgtaatgaaattatttgtcgttgctgatttatttcgtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCTGGGTTCTTCGATGCTGACTGGGATTAATCCGTGGCTACTGTGCTGTATG
species | Zea mays |
transcript | GRMZM2G086497_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG GAGGAAGACATGCTCCTAGAGAACGTCTACTATTATGAAATGAAGAGATGCEST: gi|149101731|gb|EE187868.2|EE187868
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAG-GATGC
EST: CTCTTTACCTTCCCCTCCTATATGTGACTTTTTTAGCAGACTTTTTCCAG GAGGAAGACATGCTCCTAGAGAACGTTTACTATTTTGAAATGAAGGATGCTEST: gi|211021098|gb|FL442866.1|FL442866
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCTEST: gi|211314374|gb|FL453743.1|FL453743
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: CTTTACCTTTCCCCTCCNTATATGTGACTTTCTTAGCAGACTTCTTCCAG AEST: gi|211314374|gb|FL453743.1|FL453743
genomic: CTTTACCTT-CCCCTCC-TATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttag-
EST: CTTTACCTTTCCCCTCCNTATATGTGACTTTCTTAGCAGACTTCTTCCAG AEST: gi|28982919|gb|BQ538440.2|BQ538440
genomic: CTTTACCTT-CCCCTCC-TATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttag-
EST: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCTEST: gi|149004863|gb|EE039371.2|EE039371
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG GAGGAAGACATGCTCCTAGAGAACGTTTACTATTTTGAAATGAAGGATGCTEST: gi|78123014|gb|DV541398.1|DV541398
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCTEST: gi|6865283|gb|AW360633.1|AW360633
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCTEST: gi|116814069|gb|EC856569.1|EC856569
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
EST: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAG GAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
genomic: CTCTTTACCTTCCCCTCCTATATGTGACTTTCTTAGCAGACTTCTTCCAGgtaccttctt ... gtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCT
gtctgtggcttgtaatgaaattatttgtcgttgctgatttatttcgtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCTGGGTTCTTCGATGCTGACTGGGATTAATCCGTGGCTACTGTGCTGTATG
tgctgat putative branch site (score: 72)
ttgtaatgaaattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccttcttgcctatgacctgtcacttcgcttctgtgtagtgcttcttccttagttccttagtttgtgtactggtataactgtctgtggcttgtaatgaaattatttgtcgttgctgatttatttcgtatgtttagGAGGAAGACATGCTCCTAGAGAACGTCTACTATTCTGAAATGAAGGATGCTGGGTTCTTCGATGCTGACTGGGATTAATCCGTGGCTACTGTGCTGTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG