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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgaacaagtaatattgtttgttatgaattatgcagcctatctcttttagttaaaatatttcatctgtattttgtggcaaattaaattcatggtatgcagATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAG

Basic information

species Zea mays
transcript GRMZM2G086489_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086489_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os04g55960.1 (Oryza sativa), 3'ss of exon 3
atgaacaagtaatattgtttgttatgaattatgcagcct--atctcttttagttaaaat-atttcatctgtat--------tttgtggcaaattaaatt-catggtatgcagATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAG
            | |   ||   |||| ||   ||  ||  ||||||| | | || | | | ||  |  || |        | ||| || |||||  || ||| |  || |||||||||||||||||||| || || ||||| ||| |||||||||||||||| ||||||
------------tttgcctttacatgagttgcacatactgtatctcttgtggctatattcacttgctacgtgtcaatgacttctgtagctaattatgtttcatcgagtgtagATATGGGGATGGGGAGCCTACCGACAATGCTGCAAGATTCTACAAATGGTTCACTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148941319|gb|EC886225.2|EC886225
EST:     TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTCTTCCTAGCAAC                         ATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
genomic: TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTTTTCCTAGCAACgtgagccccc ... tggtatgcagATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
EST: gi|22472411|gb|BU036891.1|BU036891
EST:     TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTCTTCCTAGCAAC                         ATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
genomic: TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTTTTCCTAGCAACgtgagccccc ... tggtatgcagATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
EST: gi|148961269|gb|EE011991.2|EE011991
EST:     TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTCTTCCTAGCAAC                         ATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACCAATGGTT
genomic: TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTTTTCCTAGCAACgtgagccccc ... tggtatgcagATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
EST: gi|26558402|gb|CA830637.1|CA830637
EST:     TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTCTTCCTAGCAAC                         ATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
genomic: TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTTTTCCTAGCAACgtgagccccc ... tggtatgcagATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
EST: gi|22541992|gb|BU092430.1|BU092430
EST:     TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTCTTCCTAGCAAC                         ATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
genomic: TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTTTTCCTAGCAACgtgagccccc ... tggtatgcagATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
EST: gi|211095653|gb|FK967022.1|FK967022
EST:     TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTCTTCCTAGCAAC                         ATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
genomic: TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTTTTCCTAGCAACgtgagccccc ... tggtatgcagATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
EST: gi|211098118|gb|FK967027.1|FK967027
EST:     TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTCTTCCTAGCAAC                         ATATGGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGT
genomic: TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTTTTCCTAGCAACgtgagccccc ... tggtatgcagATATGGGG-ATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGT
EST: gi|148940766|gb|EC885587.2|EC885587
EST:     TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTCTTCCTAGCAAC                         ATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
genomic: TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTTTTCCTAGCAACgtgagccccc ... tggtatgcagATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
EST: gi|148970820|gb|EE021584.2|EE021584
EST:     TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTCTTCCTAGCAAC                         ATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
genomic: TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTTTTCCTAGCAACgtgagccccc ... tggtatgcagATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
EST: gi|19437265|gb|BM953675.1|BM953675
EST:     TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTCTTCCTAGCAAC                         ATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT
genomic: TACGAGGAGAAGCTGAAGAAGGAAACTGTGGTGCTGTTTTTCCTAGCAACgtgagccccc ... tggtatgcagATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagttaaaatatttcatctgtattttgtggcaaattaaattcatggtatgcagATATGGGGATGGGGAGCCAACTGATAATGCAGCACGATTCTACAAATGGTTTACTGAG
     ttaaaatatttcatct  TA-rich tract