1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgatattgaacttgcacagctgttttacatttcttggtcagagtactggttgttgctagtgaagtttccgaaaacacactgaattccttgaaacgcacagGTGCGGAAGATATCCACCGGTAGTCAAAACAGCTGTGCCGGTGGATGGTAGATTTGAGCACATAGTTCTTTCCTGCAATGCCACAGCGGACCATGCCATT
species | Zea mays |
transcript | GRMZM2G085939_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTTATGCACCAGGCCGGATTTATCACATAGTCGAAAGAAGAACGTGCAG GTGCGGAAGATATCCACCGGTAGTCAAAACAGCTGTGCCGGTGGATGGTAGEST: gi|37396513|gb|CF635547.1|CF635547
genomic: CTTTATGCACCAGGCCGGATTTATCACATAGTCGAAAGAAGAACGTGCAGgtaccttttc ... aaacgcacagGTGCGGAAGATATCCACCGGTAGTCAAAACAGCTGTGCCGGTGGATGGTAG
EST: AGAACGTGCAG GTGCGGAAGATATCCACCGGTAGTCAAAACAGCTGTGCCGGTGGATGGTAG
genomic: AGAACGTGCAGgtaccttttc ... aaacgcacagGTGCGGAAGATATCCACCGGTAGTCAAAACAGCTGTGCCGGTGGATGGTAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatattgaacttgcacagctgttttacatttcttggtcagagtactggttgttgctagtgaagtttccgaaaacacactgaattccttgaaacgcacagGTGCGGAAGATATCCACCGGTAGTCAAAACAGCTGTGCCGGTGGATGGTAGATTTGAGCACATAGTTCTTTCCTGCAATGCCACAGCGGACCATGCCATT
- - - - - - - -acagctg
- - - - - - - - - - - - - - -tttcttg
- - - - - - - - - - - - - - - - - - - - - -tactggt
- - - - - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgaa