1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagctttttattagtgaaaattgtatttatttacttcatctgcagttctgttttctgacatcatgcataatatttgaggaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAACGGTTATGAGCTCGCAAGTGAGCGATGGACACCTGTGCACAC
species | Zea mays |
transcript | GRMZM2G085600_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGEST: gi|211533484|gb|FK952744.1|FK952744
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGEST: gi|211533493|gb|FK952753.1|FK952753
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGEST: gi|211530484|gb|FK952736.1|FK952736
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: AAACAGCCCGNCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG TCTATCCTGATGGEST: gi|211313830|gb|FL083564.1|FL083564
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGG
EST: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG TCTATCCTGATGGGCAGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGEST: gi|211533486|gb|FK952746.1|FK952746
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTEST: gi|211315846|gb|FL083573.1|FL083573
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGT
EST: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG TCTATCCTGATGGGCAGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGEST: gi|211530487|gb|FK952739.1|FK952739
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGEST: gi|74240335|gb|DT648249.1|DT648249
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGEST: gi|211530485|gb|FK952737.1|FK952737
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGEST: gi|211533485|gb|FK952745.1|FK952745
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
EST: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATG TCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
genomic: AAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttt ... gaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAG
cttcatctgcagttctgttttctgacatcatgcataatatttgaggaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAACGGTTATGAGCTCGCAAGTGAGCGATGGACACCTGTGCACAC
ttctgac putative branch site (score: 2)
ataatatttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagctttttattagtgaaaattgtatttatttacttcatctgcagttctgttttctgacatcatgcataatatttgaggaaacgccagTCTATCCTGATGGGCGGGTTTGTATCTCTATTCTTCATCCACCTGGTGAAGATCCAAACGGTTATGAGCTCGCAAGTGAGCGATGGACACCTGTGCACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA