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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacatccaaataatctttttttctgagctacgaacattctgtatctgtttcacccccaataacagcactgacatgagcatggttggggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTTTCGGAAACGTCTTGAGTGCTAATTTGGGACAAGCTCCTGCAAGGCAAGC

Basic information

species Zea mays
transcript GRMZM2G085474_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085474_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os09g07830.1 (Oryza sativa), 3'ss of exon 3
gtgacatccaaataatctttttttctgagctacgaacattctgtatctgtttcacccccaataacagcactgacatgagcatggttggggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTTTCGGAAACGTCTTGAGTGCTAATTTGGGACAAGCTCCTGCAAGGCAAGC
|||| | |     | | | || |  |  |||        | ||||  ||||       |   || |  ||| ||||   |||   || ||   | |||||||||||| || |||||||| ||||| ||||| ||||| |||||||| || || || || ||||||||||||||||| |||||||||||||| |||||
gtgatacc-----agtatcttctcatatgctgta-----tgtgtaattgttcttttaacccaaatataactaacat---catcagtgtggtgatcagCTGCTCTGAAGAGGGCAAATGTTGATCCAGCCCTTGTGCAAGAGGTCTTCTTTGGTAATGTGTTGAGTGCTAATTTGGGGCAAGCTCCTGCAAGACAAGC

upper sequence: GRMZM2G085474_T04 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA14G00760.1 (Glycine max), 3'ss of exon 3
gtgacatccaaataatctttttttctgagctacgaacattctgtatctgtttcacccccaataacagcactgacatgagcatggttggggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTTTCGGAAACGTCTTGAGTGCTAATTTGGGACAAGCTCCTGCAAGGCAAGC
     | | |   || | | | | | | ||||   ||||||  | |     | |            |   | ||||     | |||     |   ||||||||| ||||| || ||||| |||||  |||| ||| | || || ||||| || || ||  | |||||||||||||| |||||||||||||| |||||
---gtaactatggaagcctatgt-cagtgctaattacattccatttgaaacttattt---------gtgtttacatatttttcgttca--tctgcagCTGCTCTTAAAAGGGCCAATGTTGATCCATCCCTTGTGGAAGAAGTATTTTTTGGGAATGTTCTTAGTGCTAATTTGGGGCAAGCTCCTGCAAGACAAGC

upper sequence: GRMZM2G085474_T04 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA02G47860.2 (Glycine max), 3'ss of exon 3
gtgacatccaaataatctttttttctgag--ctacgaacattctgtatctgtttcacccccaataacagcactgacatgagcatggttggggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTTTCGGAAACGTCTTGAGTGCTAATTTGGGACAAGCTCCTGCAAGGCAAGC
            |||   | | ||  ||   ||| |    | ||   |   || ||     | ||   |   | ||||     | |||     |   ||||||||| ||||| || ||||| |||||  |||| ||| | || || |||||||| || ||  | |||||||||||||| |||||||||||||| |||||
-----------gtaactatgtctttggaaacctatgtcagtgcttattacattgcatttgaattatttgtgtttacatatttttcgttca--tctgcagCTGCTCTTAAAAGGGCCAATGTTGATCCATCCCTTGTGGAAGAAGTATTTTTCGGGAATGTTCTTAGTGCTAATTTGGGGCAAGCTCCTGCAAGACAAGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211388472|gb|FL095521.1|FL095521
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCACGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|78114650|gb|DV533038.1|DV533038
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211388476|gb|FL095525.1|FL095525
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211388474|gb|FL095523.1|FL095523
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211391118|gb|FL095541.1|FL095541
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|149045418|gb|EE047840.2|EE047840
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|148965113|gb|EE015927.2|EE015927
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|31358163|gb|CD442520.1|CD442520
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211391121|gb|FL095544.1|FL095544
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|6564173|gb|AW231795.1|AW231795
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211388481|gb|FL095530.1|FL095530
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211383214|gb|FL095504.1|FL095504
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211385842|gb|FL095512.1|FL095512
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211385836|gb|FL095506.1|FL095506
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211391119|gb|FL095542.1|FL095542
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211388478|gb|FL095527.1|FL095527
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211385845|gb|FL095515.1|FL095515
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211391123|gb|FL095546.1|FL095546
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|149008746|gb|EE040943.2|EE040943
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211388484|gb|FL095533.1|FL095533
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211391115|gb|FL095538.1|FL095538
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|37421375|gb|CF648386.1|CF648386
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211388483|gb|FL095532.1|FL095532
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211388477|gb|FL095526.1|FL095526
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|29130092|gb|CB380796.1|CB380796
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211385847|gb|FL095517.1|FL095517
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211385837|gb|FL095507.1|FL095507
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211391113|gb|FL095536.1|FL095536
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211385843|gb|FL095513.1|FL095513
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211388475|gb|FL095524.1|FL095524
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211388482|gb|FL095531.1|FL095531
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|211385838|gb|FL095508.1|FL095508
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCAGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|32863231|gb|CF002913.1|CF002913
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGCTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
EST: gi|149050402|gb|EE155650.2|EE155650
EST:     TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAG                         CTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT
genomic: TGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 172

ATGTATGTGTTGTTGGCGTTGCACGCACCCCTTTGGGTGGTTTCCTTGGTGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTTTCGGAAACGTCTTGAGTGCTAATTTGGGACAAGCTCCTGCAAGGCAAGC


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 182

ATGTATGTGTTGTTGGCGTTGCACGCACCCCTTTGGGTGGTTTCCTTGGTGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTTTCGGAAACGTCTTGAGTGCTAATTTGGGACAAGCTCCTGCAAGGCAAGC


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 141

ATGTATGTGTTGTTGGCGTTGCACGCACCCCTTTGGGTGGTTTCCTTGGTGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTTTCGGAAACGTCTTGAGTGCTAATTTGGGACAAGCTCCTGCAAGGCAAGC


Block sizes: 42 (upstream exon), 49 (downstream exon)
Score: 370

ATGTATGTGTTGTTGGCGTTGCACGCACCCCTTTGGGTGGTTTCCTTGGTGCCTTGTCTTCCTTGCCCGCAACAAAGCTTGGTTCTATAGCAATTGAAGgtgacatcca ... gggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTTTCGGAAACGTCTTGAGTGCTAATTTGGGACAAGCTCCTGCAAGGCAAGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatctgtttcacccccaataacagcactgacatgagcatggttggggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTTTCGGAAACGTCTTGAGTGCTAATTTGGGACAAGCTCCTGCAAGGCAAGC
                         cactgac  putative branch site (score: 370)
                 aataaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgacatccaaataatctttttttctgagctacgaacattctgtatctgtttcacccccaataacagcactgacatgagcatggttggggccgttagCTGCTCTGAAAAGAGCAAATGTGGATCCGGCCCTCGTGCAGGAGGTCTTTTTCGGAAACGTCTTGAGTGCTAATTTGGGACAAGCTCCTGCAAGGCAAGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT