1 5' 3' | 2 5' 3' | 3 5' 3' |
...atagctcgtggttcctttctgttcctttttcatgtgtttatgatcttcccttcaatgatagtgtcctttatagagctattaacataagatatgcttgcagGTTGATGTTTACCTCCTGCCTCAGTCTGCATTTCCAACCGGAGGCCTATATTTCAAGAATAAAAAATGGGTCAAGGAGACAAAGGGCAAGCATGTCATTA
species | Zea mays |
transcript | GRMZM2G085042_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAATGATCAGCCAGCATTCAACTGGGCTTTGAACAAGACTGCCGGGCAGG GTTGATGTTTACCTCCTGCCTCAGTCTGCATTTCCAACCGGAGGCCTATAEST: gi|78076249|gb|DV504683.1|DV504683
genomic: CAAATGATCAGCCAGCATTCAACTGGGCTTTGAACAAGACTGCCGGGCA-Ggttatgtttc ... atgcttgcagGTTGATGTTTACCTCCTGCCTCAGTCTGCATTTCCAACCGGAGGCCTATA
EST: CAAATGATCAGCCAGCATTCAACTGGGCTTTGAACAAGACTGCCGGGCAG GGTTGATGTTTACCTCCTGCCTCAGTCTGCATTTCCAACCGGAGGCCTATAEST: gi|76293334|gb|DV032902.1|DV032902
genomic: CAAATGATCAGCCAGCATTCAACTGGGCTTTGAACAAGACTGCCGGGCAGgttatgtttc ... atgcttgcagG-TTGATGTTTACCTCCTGCCTCAGTCTGCATTTCCAACCGGAGGCCTATA
EST: CAAATGATCAGCCAGCATTCAACTGGGCTTTGAACAAGACTGCCGGGCAG GTTGATGTTTACCTCCTGCCTCAGTCTGCATTTCCAACCGGAGGCCTATAT
genomic: CAAATGATCAGCCAGCATTCAACTGGGCTTTGAACAAGACTGCCGGGCAGgttatgtttc ... atgcttgcagGTTGATGTTTACCTCCTGCCTCAGTCTGCATTTCCAACCGGAGGCCTATAT
ttcccttcaatgatagtgtcctttatagagctattaacataagatatgcttgcagGTTGATGTTTACCTCCTGCCTCAGTCTGCATTTCCAACCGGAGGCCTATATTTCAAGAATAAAAAATGGGTCAAGGAGACAAAGGGCAAGCATGTCATTA
tattaac putative branch site (score: 26)
tattaacataagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagctcgtggttcctttctgttcctttttcatgtgtttatgatcttcccttcaatgatagtgtcctttatagagctattaacataagatatgcttgcagGTTGATGTTTACCTCCTGCCTCAGTCTGCATTTCCAACCGGAGGCCTATATTTCAAGAATAAAAAATGGGTCAAGGAGACAAAGGGCAAGCATGTCATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- -gctcgtg
- - - - - - - - - ctgttcc
- - - - - - - - - - - - - - - - tgtgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacataa