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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtattcaacgtatcttctttttgtttctgctcttaaaggttgttccttttagtcacctttgtttgtgctttgtttttcagGTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAGTAAGTAAATAAGTACCAAGTAATTCAAAAGTATATGATATGTTTTAAC

Basic information

species Zea mays
transcript GRMZM2G085000_T05
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G085000_T05 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os08g44400.3 (Oryza sativa), 3'ss of exon 6
gtgtgtattcaacgtatcttctttttgtttctgctcttaaaggttgttccttttagtcacctttgtttgtgctttgtttttcagGTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAGTAAGTAAATAAGTACCAAGTAATTCAAAAGTATATGATATGTTTTAAC
|||  ||||  |  | || ||| |   | ||  || |    ||    ||||  ||  | |||   ||||  | ||| ||||||||||||||||  ||||||||||||||||| |||||| | || |||                                                 
gtgcctatttcatctctcatctgtacatctcc-ctgtccctggggcctcctactaacctcctgcatttgc-ccttgcttttcagGTGATGGAACAGTTCCAATTATGCTATCACTTGGTATATTAACA-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87151648|gb|DY396437.1|DY396437
EST:     CGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATG                         GTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAGTAAGTA
genomic: CGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATGgtgtgtattc ... tgtttttcagGTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAGTAAGTA
EST: gi|18964160|gb|BM660845.1|BM660845
EST:     CGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATG                         GTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAGTAAGTA
genomic: CGCCATGTATGAATCAGATGACATCATAAAATACCTAGCTGACACATATGgtgtgtattc ... tgtttttcagGTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAGTAAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgctcttaaaggttgttccttttagtcacctttgtttgtgctttgtttttcagGTGATGGAAGTGTTCCAATTATGCTATCGCTTGGTCTGTTGACAGTAAGTAAATAAGTACCAAGTAATTCAAAAGTATATGATATGTTTTAAC
                                          ctttgtttttc  CT-rich tract
                                           tttgttttt  TA-rich tract