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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaacctctattgcctctgcctcctgtttatctctaactgtacctacatttgttgcaccaaaccctaataatttttgctgaacaatcatgctgacttattcctcttcttcattgtttgtgtattcttccaaatcttcagTTGTCCATTTTGTCGAAAG

Basic information

species Zea mays
transcript GRMZM2G085000_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60343918|gb|DN210891.1|DN210891
EST:     GGACAGTGCAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGAAAG
genomic: GGACAGTGCAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGGgtacaacctc ... aaatcttcagTTGTCCATTTTGTCGAAAG
EST: gi|211469259|gb|FL411595.1|FL411595
EST:     GGACAGTGCAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGAAAG
genomic: GGACAGTGCAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGGgtacaacctc ... aaatcttcagTTGTCCATTTTGTCGAAAG
EST: gi|60394591|gb|DN227461.1|DN227461
EST:     GGACAGTGCAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGG                         TTGTCCATTTTGTCGAAAG
genomic: GGACAGTGCAAACGACCGGAAAAGCCGATCGAGATATATGAATTTGAAGGgtacaacctc ... aaatcttcagTTGTCCATTTTGTCGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatgctgacttattcctcttcttcattgtttgtgtattcttccaaatcttcagTTGTCCATTTTGTCGAAAG
    tgctgac  putative branch site (score: 2)
                                      ttcttcca  putative PPT
         acttatt  TA-rich tract