1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agcatacatgcatccacctactactccattagtacatgcaaataacatgttctgaaccctaataattgtaatgtctgttcattattttattggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATTAGGGATCCCTGTTAAGGTTCTAATTGATTCAGCTGTTGCTTATTCCAT
species | Zea mays |
transcript | GRMZM2G084647_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|32928780|gb|CF033592.1|CF033592
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: ACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|71328055|gb|DR800674.1|DR800674
genomic: ACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|76282990|gb|DV022558.1|DV022558
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|71758051|gb|DR955988.1|DR955988
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|78118155|gb|DV536542.1|DV536542
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|76928321|gb|DV171574.1|DV171574
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|71762540|gb|DR960477.1|DR960477
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|18965102|gb|BM661393.1|BM661393
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|78105935|gb|DV524353.1|DV524353
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|211260422|gb|FL227455.1|FL227455
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGEST: gi|50337597|gb|CO532723.1|CO532723
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGG
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|71769908|gb|DR967845.1|DR967845
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|71764897|gb|DR962834.1|DR962834
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|60348428|gb|DN215401.1|DN215401
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|19351346|gb|BM895878.1|BM895878
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|22490267|gb|BU050190.1|BU050190
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|19272520|gb|BM888776.1|BM888776
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATEST: gi|31360905|gb|CD445262.1|CD445262
genomic: TCTAAAGCTTGCTGCATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
EST: CATCCAATCGCAAGCTCTTCCGGGTACTATGCACAG AGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
genomic: CATCCAATCGCAAGCTCTTCCGGGTACTATGCACAGgtacaatgat ... tggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCAT
catgttctgaaccctaataattgtaatgtctgttcattattttattggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATTAGGGATCCCTGTTAAGGTTCTAATTGATTCAGCTGTTGCTTATTCCAT
ccctaat putative branch site (score: 79)
ttttatt putative PPT
tgttcattattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcatacatgcatccacctactactccattagtacatgcaaataacatgttctgaaccctaataattgtaatgtctgttcattattttattggaccgcagAGGGCAGGCCAGACAGAACTGGTTTAAGGATGTCAAATGAACTTGCAGCATTAGGGATCCCTGTTAAGGTTCTAATTGATTCAGCTGTTGCTTATTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - tacatgc
- - - - - - - cacctac
- - - - - - - - - - - - - - - - - - - - aataaca
- - - - - - - - - - - - - - - - - - - - - - - -tgttctg