1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctttctttctccaacatagttgataatttctgatttttttaataaaagagtggaagggacaaaagctttggtgtactaatttctggtttctatctccagCACCCTGACATTGCAAATGTTTGTTGCATGCCAAGGGATCCCTGTTTTGGTAAGCTTTATGGAGCCTGACTATGCAAAATACAG
species | Zea mays |
transcript | GRMZM2G084586_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGTTCGGGTGCAAGCATCCTTGGTTCTTCAGCAGCTNTGTCAAGCCAG CACCCTGACATTGCAAATGTTTGTTGCATGCCAAGGGATCCCTGTTTTGGTEST: gi|87157295|gb|DY402084.1|DY402084
genomic: GATGTTCGGGTGCAAGCATCCTTGTTTCTTCAGCAGCTTTGTCAAGCCAGgtctttttct ... ctatctccagCACCCTGACATTGCAAATGTTTGTTGCATGCCAAGGGATCCCTGTTTTGGT
EST: GATGTTCGGGTGCAAGCATCCTTGTTTCTTCAGCAGCTTTGTCAAGCCAG CACCCTGACATTGCAAATGTTTGTTGCATGCCAAGGGATCCCTGTTTTGGTEST: gi|22715438|gb|BU197763.1|BU197763
genomic: GATGTTCGGGTGCAAGCATCCTTGTTTCTTCAGCAGCTTTGTCAAGCCAGgtctttttct ... ctatctccagCACCCTGACATTGCAAATGTTTGTTGCATGCCAAGGGATCCCTGTTTTGGT
EST: GATGTTCGGGTGCAAGCATCCTTGTTTCTTCAGCAGCTTTGTCAAGCCAG CACCCTGACATTGCAAATGTTTGTTGCATGCCAAGGGATCCCTGTTTTGGTEST: gi|26559471|gb|CA831706.1|CA831706
genomic: GATGTTCGGGTGCAAGCATCCTTGTTTCTTCAGCAGCTTTGTCAAGCCAGgtctttttct ... ctatctccagCACCCTGACATTGCAAATGTTTGTTGCATGCCAAGGGATCCCTGTTTTGGT
EST: GATGTTCGGGTGCAAGCATCCTTGTTTCTTCAGCAGCTTTGTCAAGCCAG CACCCTGACATTGCAAATGTTTGTTGCATGCCAAGGGATCCCTGTTTTGGT
genomic: GATGTTCGGGTGCAAGCATCCTTGTTTCTTCAGCAGCTTTGTCAAGCCAGgtctttttct ... ctatctccagCACCCTGACATTGCAAATGTTTGTTGCATGCCAAGGGATCCCTGTTTTGGT
aaagagtggaagggacaaaagctttggtgtactaatttctggtttctatctccagCACCCTGACATTGCAAATGTTTGTTGCATGCCAAGGGATCCCTGTTTTGGTAAGCTTTATGGAGCCTGACTATGCAAAATACAG
tactaat putative branch site (score: 64)
tttctatctcc putative PPT
tactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttctttctccaacatagttgataatttctgatttttttaataaaagagtggaagggacaaaagctttggtgtactaatttctggtttctatctccagCACCCTGACATTGCAAATGTTTGTTGCATGCCAAGGGATCCCTGTTTTGGTAAGCTTTATGGAGCCTGACTATGCAAAATACAG
- - - - - - caacata
- - - - - - - - - - - - - -tttctga
- - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttggtg