1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtctgttaattagccgagatcgacctctcgatctatcgctggagctatatataccccctcccccctatagagaatgactgatgagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGACCAAGTATCTCAACTTCAAGGCTGTTGACGGGAGCTTTGTGTACAACA
species | Zea mays |
transcript | GRMZM2G084440_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|78119657|gb|DV538041.1|DV538041
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|78108949|gb|DV527366.1|DV527366
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|211267087|gb|FL311760.1|FL311760
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCA-SAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|6827020|gb|AW330663.1|AW330663
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|50324747|gb|CO519873.1|CO519873
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|211349904|gb|FL349175.1|FL349175
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|78179007|gb|DV549380.1|DV549380
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|12045994|gb|BF728029.1|BF728029
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|211226808|gb|FL338396.1|FL338396
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCASAAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|211447007|gb|FL349613.1|FL349613
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|211436016|gb|FL361907.1|FL361907
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|211520280|gb|FL356686.1|FL356686
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCA-CAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGEST: gi|78093304|gb|DV521678.1|DV521678
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
EST: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAG TTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
genomic: CCGAGCACCTGGGCGTCAGCAAAGAGTACAACGTCGACATGGTGCCCAAGgtctgttaat ... gagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTG
gctggagctatatataccccctcccccctatagagaatgactgatgagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGACCAAGTATCTCAACTTCAAGGCTGTTGACGGGAGCTTTGTGTACAACA
gactgat putative branch site (score: 930)
tatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgttaattagccgagatcgacctctcgatctatcgctggagctatatataccccctcccccctatagagaatgactgatgagtttacagTTCATGATGGCAAACGGCGCGCTGGTCCGCGTCCTGATCCGCACCAGCGTGACCAAGTATCTCAACTTCAAGGCTGTTGACGGGAGCTTTGTGTACAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT