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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctctctgttctttctgaaggcttataggttatcatgcaagtagtagcgtagttaagtatatgttgaatttaggtaataattgctaatccctgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAAGCTGCAGCTAAGACCAACGATCTTGCTGGAGATGGGACAACCACCTCTG

Basic information

species Zea mays
transcript GRMZM2G083716_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G083716_T04 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os06g02380.1 (Oryza sativa), 3'ss of exon 3
ctctctgttctttctgaa--ggcttataggttatcatgcaagtagtagcgtagttaagt---atatgttgaatttaggtaataattgctaatccctgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAAGCTGCAGCTAAGACCAACGATCTTGCTGGAGATGGGACAACCACCTCTG
     | |||||  ||||   |   |  ||   |      | ||   | |||    |||   | |  ||||    |  |   || |    ||| |||| ||| ||||||| |||||||| ||||| ||||| ||||||||||| ||||| |||||||| ||||| |||||||| ||| | ||||||||||| ||||| || ||||
-----ttttcttattgaacaagtcaactggaggtttctggattatctgtgtaacctagttccagaatttgagcagaattttcaagtaacgatctctgtactgcagGTTGAACTGGAGGATCCTGTTGAAAATATTGGAGCTAAGTTGGTTAGGCAAGCAGCAGCAAAGACCAATGATTTAGCTGGAGATGGCACAACTACTTCTG

upper sequence: GRMZM2G083716_T04 (Zea mays), 3'ss of exon 3
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 3'ss of exon 3
---ctctctgttctttctgaaggcttataggttatcatgcaagtagt--agcgtagttaagtatatgttgaatttaggtaataattgctaatccctgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAAGCTGCAGCTAAGACCAACGATCTTGCTGGAGATGGGACAACCACCTCTG
   |   |  |   | ||  | | | | |   | ||  | || ||    | |  |  |  ||   ||  | | |||  | ||  ||  | ||| |    || ||||||||| ||||||| ||||| || || ||||| |||||||| || || ||||| || || |||||||||||  | ||||| ||||||||||| || ||||
atgcctaccatctgtccttgacgttgagattgtctccagtaaatatctcaacacaaatttgtccgtgaggcacttat-tgatgttttgttatcac----ctatagGTTGAGTTGGAGGATCCTGTTGAGAATATTGGTGCTAAATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTG

upper sequence: GRMZM2G083716_T04 (Zea mays), 3'ss of exon 3
lower sequence: PP1S276_75V6.1 (Physcomitrella patens), 3'ss of exon 2
---------------------------------------ctctctgttctttctgaaggcttataggttatcatgcaa-gtagtagcgtagttaa---gtatatgttgaatttaggtaat--aattgctaat--ccctgttct----gtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAAGCTGCAGCTAAGACCAACGATCTTGCTGGAGATGGGACAACCACCTCTG
                                        | | | | ||   || |    |   |   | || |    | | |   ||| |  |   |  |||| ||   |||| || |  |||||   ||  | |||  ||    |||||| ||||| || ||||| || || || |||||||| || ||||| ||||||||| | || |||||||||||| | ||||| ||||| || ||||||||||
gttagtggtgtctccccttacgtgagggtcgaggttcatgtgtttctgctccttggaaatctcctgagaaccacgtggcgaactcaagtaatgcacttgcttatgatgggattagctagttgaattgactatggcgctgaactcaatgtagGTCGAGCTCGAAGACCCAGTCGAGAATATTGGAGCCAAGTTGGTTAGGCAAGCTTCTGCCAAGACCAACGATTTGGCTGGTGATGGTACCACCACCTCTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149009207|gb|EE041320.2|EE041320
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211425622|gb|FL361850.1|FL361850
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|6636998|gb|AW261270.1|AW261270
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGNTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211412337|gb|FL345665.1|FL345665
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCNA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211529294|gb|FL356728.1|FL356728
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAAC-TTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|32849132|gb|CD988813.1|CD988813
EST:     GCTCTCCCCAAGATTGTTAACGATGGCGTTACAGTTCCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: GCTCT-CCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|71764884|gb|DR962821.1|DR962821
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211472722|gb|FL335027.1|FL335027
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|148941096|gb|EC885959.2|EC885959
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211402127|gb|FL345609.1|FL345609
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|149080249|gb|EE169273.2|EE169273
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211322750|gb|FL352371.1|FL352371
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|32849348|gb|CD989029.1|CD989029
EST:     GTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAAGAGAG                         GTTGAGCTGGAGGAACCCTGTGGAAACCATTGGAGCTAAATTGGTCAGGC
genomic: GTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGC-AAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGG-ACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGC
EST: gi|148959020|gb|EE010533.2|EE010533
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211277762|gb|FL330400.1|FL330400
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|148963973|gb|EE015101.2|EE015101
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|32935083|gb|CF039895.1|CF039895
EST:     ACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: ACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|78080918|gb|DV509330.1|DV509330
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211003840|gb|FL306635.1|FL306635
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|148940496|gb|EC885295.2|EC885295
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211393798|gb|FL326098.1|FL326098
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211046076|gb|FL310634.1|FL310634
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211301789|gb|FL326006.1|FL326006
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211509889|gb|FL321846.1|FL321846
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|149099158|gb|EE185183.2|EE185183
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|149075815|gb|EE164351.2|EE164351
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|148983129|gb|EE029060.2|EE029060
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211055913|gb|FL348005.1|FL348005
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAAACATTGGAGCTAAATTGGTCAGGCA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAA-CATTGGAGCTAAATTGGTCAGGCA
EST: gi|211053293|gb|FL359912.1|FL359912
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|32934340|gb|CF039152.1|CF039152
EST:     GTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: GTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|148961770|gb|EE012547.2|EE012547
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211419075|gb|FL312381.1|FL312381
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211510315|gb|FL346123.1|FL346123
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|211503202|gb|FL344792.1|FL344792
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|33094317|gb|CF054311.1|CF054311
EST:     GATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: GATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|32933718|gb|CF038530.1|CF038530
EST:     ACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: ACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|149013866|gb|EE043351.2|EE043351
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|148983089|gb|EE029008.2|EE029008
EST:     AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
EST: gi|32848870|gb|CD988551.1|CD988551
EST:     AGTATGGTTCTCCTAAAATTGTTAACGATGGCGTTACAGTTGCAAGAGAG                         GTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA
genomic: AGTACGGCTCTCCCAAGATTGTTAACGATGGCGTTACAGTTGCAAGAGAGgtacagtgca ... tgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgtagttaagtatatgttgaatttaggtaataattgctaatccctgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAAGCTGCAGCTAAGACCAACGATCTTGCTGGAGATGGGACAACCACCTCTG
                                   tgctaat  putative branch site (score: 2)
                                         tccctgttct  CT-rich tract
                    aatttaggtaataatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctctctgttctttctgaaggcttataggttatcatgcaagtagtagcgtagttaagtatatgttgaatttaggtaataattgctaatccctgttctgtagGTTGAGCTGGAGGACCCTGTGGAAAACATTGGAGCTAAATTGGTCAGGCAAGCTGCAGCTAAGACCAACGATCTTGCTGGAGATGGGACAACCACCTCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG