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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaattaattaattggcattgtgttgcctgattcagcaactcgtgcttcatgtgctggaagaatcgtgagcctttctctgtttttcctttttcttttcccggtagGAATCGCTGAATGCCCGGTACAACCGATCAGGTTTCGACAACCCCTGGTTCGTCATCGGGGTCTCCTACTCCGGCGCTCTCAGCGCCTGGTTCAGGCTCA

Basic information

species Zea mays
transcript GRMZM2G082502_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18659380|gb|BM500307.1|BM500307
EST:     CGTCGAAGCAGGCCCTGTTCGACCTGGCCGTCTTCCGGCAGTACTATCAG                         GAATCGCTGAATGCCCGGTACAACCGATCAGGTTTCGACAACCCCTGGTTC
genomic: CGTCGAAGCAGGCCCTGTTCGACCTGGCCGTCTTCCGGCAGTACTATCAGgtttaattaa ... ttcccggtagGAATCGCTGAATGCCCGGTACAACCGATCAGGTTTCGACAACCCCTGGTTC
EST: gi|74233811|gb|DT641725.1|DT641725
EST:     CGTCGAAGCAGGCCCTGTTCGACCTGGCCGTCTTCCGGCAGTACTATCAG                         GAATCGCTGAATGCCCGGTACAACCGATCAGGTTTCGACAACCCCTGGTTC
genomic: CGTCGAAGCAGGCCCTGTTCGACCTGGCCGTCTTCCGGCAGTACTATCAGgtttaattaa ... ttcccggtagGAATCGCTGAATGCCCGGTACAACCGATCAGGTTTCGACAACCCCTGGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgctggaagaatcgtgagcctttctctgtttttcctttttcttttcccggtagGAATCGCTGAATGCCCGGTACAACCGATCAGGTTTCGACAACCCCTGGTTCGTCATCGGGGTCTCCTACTCCGGCGCTCTCAGCGCCTGGTTCAGGCTCA
             tcgtgagcctttctct  CT-rich tract
 tttttctttt  TA-rich tract