Sequence
atgc intronic sequence ATGC exonic sequencegtatttaacttttatgctccatgtttgcatttgtttgacgattcatagggtgcttctttatctcaactttttaagacttggttgtatgatccagaagctcaaacaatcactggtatgttttggaatattaaacaggattttgctttgactcaatgcagCGGATGCCGAGCAGATGCAAATGAAGCCGCTGTTATACTTCTTCCTTCAAATATCACTGTTTTCACACTTGACTTTTCTGGGTCAGGTCTATCCGGCGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G081642_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g10440.1 (Oryza sativa), 3'ss of exon 3
gtatttaacttttatgctccatgtttgcatttgtttgacgattcatagggtgcttctttatctcaactttttaagacttggttg-tatgatccagaagctcaaacaatcactggtatgttttggaatattaaacaggattttgctttgactcaatgcagCGGATGCCGAGCAGATGCAAATGAAGCCGCTGTTATACTTCTTCCTTCAAATATCACTGTTTTCACACTTGACTTTTCTGGGTCAGGTCTATCCGGCGGG
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------------------------------------------------------gttatgagctagcatttcct--cttaactgatgagattcat---ctcaagcaatcaccgatatcttttggaatctttaacaggcttttgctttgactcaatgcagTGGATGCCGGGCAGATGCAAATGAAGCTGCTGTTATACTGCTTCCTGCAAATATCACTGTTTTTACACTTGATTTTTCCGGGTCAGGTCTATCAGGTGGA
upper sequence: GRMZM2G081642_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA17G00770.1 (Glycine max), 3'ss of exon 4
gtatttaacttttatgctccatgtttgcatttgtttgacgattcatagggtgcttctttatctcaactttttaagacttggt---tgtatgatccagaagctcaaacaatcactggtatgttttggaatattaaacaggattttgctttgactcaatgcagCGGATGCCGAGCAGATGCAAATGAAGCCGCTGTTATACTTCTTCCTTCAAATATCACTGTTTTCACACTTGACTTTTCTGGGTCAGGTCTATCCGGCGGG
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----------------------------------gtacttgttattaaaatgactcttgtcttgatgcttttaaaaaattgtatatgcatgatcatagagttttt-tagctattctattcttctcccttgtgatatgtgtgcatacatacaat-gatgcagTGGATGTAGGGCAGATGCCAATGAAGCTGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGA
upper sequence: GRMZM2G081642_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA09G02050.1 (Glycine max), 3'ss of exon 4
gtatttaa-cttttatgctccatgtttgcatttgtttgacgattcatagggtgcttctttatctcaacttttt---aagacttggttgtatgatccagaagctcaaacaatcactggtatgttttggaatattaaacaggattttgctttgactcaatgcagCGGATGCCGAGCAGATGCAAATGAAGCCGCTGTTATACTTCTTCCTTCAAATATCACTGTTTTCACACTTGACTTTTCTGGGTCAGGTCTATCCGGCGGG
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gtaagcaaatttttatggatactgctatcact-gcaagagattctatacggtttacagtcataaagaccctttttgaacattcttttctttttttcagaa--tgacacactcattc---cattcttctcttttcatatgtatgtacatgtacaatgatgcagTGGATGTAGGGCAGATGCCAATGAAGCTGCTGTTATTCTTCTTCCATCAAATATTACTGTCTTTACTCTTGACTTTTCGGGGTCAGGCTTGTCTGATGGA
upper sequence: GRMZM2G081642_T03 (Zea mays), 3'ss of exon 3
lower sequence: GLYMA07G40050.1 (Glycine max), 3'ss of exon 4
gtatttaacttttatgctccatgtttgcatttgtttgacgattcatagggtgcttctttatctcaactttttaagacttggtt--gtatgatccagaagctcaaacaatcactggtatgttttggaatattaaacaggattttgctttgactcaatgcagCGGATGCCGAGCAGATGCAAATGAAGCCGCTGTTATACTTCTTCCTTCAAATATCACTGTTTTCACACTTGACTTTTCTGGGTCAGGTCTATCCGGCGGG
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--------------------------gtatttgtt-----attaaaatggttattgtcttgat--gcttttaaaaaattgtatatgtgtgatcattattttttagctatt-ctattcttctcccttgtgatatgtgtgcatacg---tacaatgatgcagTGGATGTAGGGCAGATGCCAATGAAGCTGCTGTAATTCTTCTTCCTTCAAATATTACTGTTTTTACCCTTGACTTCTCGGGGTCAGGCTTATCTGATGGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|148969598|gb|EE020437.2|EE020437EST: ATCCCAGAGAATACTGCCCTCCCATGTGTGGTCTATTGCCATGGAAATAG CGGATGCCGAGCAGATGCAAATGAAGCCGCTGTTATACTTCTTCCTTCAAA
genomic: ATCCCAGAGAATACTGCCCTCCCATGTGTGGTCTATTGCCATGGAAATAGgtatttaact ... ctcaatgcagCGGATGCCGAGCAGATGCAAATGAAGCCGCTGTTATACTTCTTCCTTCAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caatcactggtatgttttggaatattaaacaggattttgctttgactcaatgcagCGGATGCCGAGCAGATGCAAATGAAGCCGCTGTTATACTTCTTCCTTCAAATATCACTGTTTTCACACTTGACTTTTCTGGGTCAGGTCTATCCGGCGGG
ctttgac putative branch site (score: 4)
ttttggaatattaaa TA-rich tract