1 5' 3' | 2 5' 3' | 3 5' 3' |
...ctgatttttctgccattattatttataaggcgtttatttttatgtacaaggaccagttcagaatgaacttgagccttaatgcattggtttcatatttcagTGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTCCGGCGCAGAATGCTCCCATGGCACACTCGCGCTGGACTTGTTGTCTACA
species | Zea mays |
transcript | GRMZM2G081148_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAG TGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTCEST: gi|91871080|gb|EB401231.1|EB401231
genomic: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAGgtgagacaca ... catatttcagTGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTC
EST: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAG TGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTCEST: gi|211319649|gb|FL072381.1|FL072381
genomic: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAGgtgagacaca ... catatttcagTGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTC
EST: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAG TGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAEST: gi|211319650|gb|FL072382.1|FL072382
genomic: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAGgtgagacaca ... catatttcagTGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACA
EST: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAG TGGCTATTTGGCGTTGCTACCTTCTTCTTEST: gi|28983011|gb|BQ538423.2|BQ538423
genomic: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAGgtgagacaca ... catatttcagTGGCTATTTGGCGTTGCTACCTTCTTCTT
EST: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAG TGGCTATTTGGCGTTGATACATTCTTCTTCCATGGTGCTTCGCCAACAGTCEST: gi|76920483|gb|DV168196.1|DV168196
genomic: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAGgtgagacaca ... catatttcagTGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTC
EST: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAG TGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTCEST: gi|211319643|gb|FL072375.1|FL072375
genomic: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAGgtgagacaca ... catatttcagTGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTC
EST: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAG TGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTCEST: gi|50323966|gb|CO519092.1|CO519092
genomic: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAGgtgagacaca ... catatttcagTGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTC
EST: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAG TGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTC
genomic: GCTTGCATTCGTGGGTTGGACTTGGAACTATCTGCCTGTACGGTATACAGgtgagacaca ... catatttcagTGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTC
acaaggaccagttcagaatgaacttgagccttaatgcattggtttcatatttcagTGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTCCGGCGCAGAATGCTCCCATGGCACACTCGCGCTGGACTTGTTGTCTACA
ccttaat putative branch site (score: 24)
tttcatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgatttttctgccattattatttataaggcgtttatttttatgtacaaggaccagttcagaatgaacttgagccttaatgcattggtttcatatttcagTGGCTATTTGGCGTTGCTACCTTCTTCTTCCCTGGTGCTTCGCCAACAGTCCGGCGCAGAATGCTCCCATGGCACACTCGCGCTGGACTTGTTGTCTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
ctgattt
- - - -ttctgcc
- - - - - - - - - - - - - - - - - - - - - - - - -ggaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcatt