1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atatgtggatcttgacaaaagcatactttgcacgtctctaggacttgtactataccttccactgttgcattacttatgatacctcattgttgtaatgcagGAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGTGACGGGAGCAGTCAAGAAGCAGCAGGCAAAGGAGAAGACACCTAACAGT
species | Zea mays |
transcript | GRMZM2G080917_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGTCGCATTCTACTTTGGTGCACGGTTTGGATTTGACAGAGAAGCTAG GAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGTEST: gi|211455959|gb|FL147587.1|FL147587
genomic: TCTGTCGCATTCTACTTTGGTGCACGGTTTGGATTTGACAGAGAAGCTAGgtaatttgtt ... tgtaatgcagGAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGT
EST: TCTGTCGCATTCTACTTTGGTGCACGGTTTGGATTTGACAGAGAAGCTAA GANGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGTEST: gi|148945591|gb|EC890845.2|EC890845
genomic: TCTGTCGCATTCTACTTTGGTGCACGGTTTGGATTTGACAGAGAAGCTAGgtaatttgtt ... tgtaatgcagGAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGT
EST: TCTGTCGCATTCTACTTTGGTGCACGGTTTGGATTTGACAGAGAAGCTAG GAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGTEST: gi|211520812|gb|FL147606.1|FL147606
genomic: TCTGTCGCATTCTACTTTGGTGCACGGTTTGGATTTGACAGAGAAGCTAGgtaatttgtt ... tgtaatgcagGAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGT
EST: TCTGTCGCATTCTACTTTGGTGCACGGTTTGGATTTGACAGAGAAGCTAG GAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGTEST: gi|60340127|gb|DN207100.1|DN207100
genomic: TCTGTCGCATTCTACTTTGGTGCACGGTTTGGATTTGACAGAGAAGCTAGgtaatttgtt ... tgtaatgcagGAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGT
EST: TGACAGAGAAGCTAG GAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGTEST: gi|148997618|gb|EE035837.2|EE035837
genomic: TGACAGAGAAGCTAGgtaatttgtt ... tgtaatgcagGAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGT
EST: TCTGTCGCATTCTACTTTGGTGCACGGTTTGGATTTGACAGAGAAGCTAG GAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGT
genomic: TCTGTCGCATTCTACTTTGGTGCACGGTTTGGATTTGACAGAGAAGCTAGgtaatttgtt ... tgtaatgcagGAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGT
tgtactataccttccactgttgcattacttatgatacctcattgttgtaatgcagGAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGTGACGGGAGCAGTCAAGAAGCAGCAGGCAAAGGAGAAGACACCTAACAGT
attacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgtggatcttgacaaaagcatactttgcacgtctctaggacttgtactataccttccactgttgcattacttatgatacctcattgttgtaatgcagGAGGCGGCTCTTTAGCCTGATAAACAACATGCCCACGATATTTGAGGTGGTGACGGGAGCAGTCAAGAAGCAGCAGGCAAAGGAGAAGACACCTAACAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA