Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaacctagcctagcctggctcttgacgtagagcaatccgcattcagcaatatgctgtattatctgttccgacttccgatcgaactgttttgcctgtgatcaatcagGACGCTGGACAGGACGATCTCGAACCTGGAGATGGAGCTAGCGTCCGCGAAGGCGACGCAGGAGTCCATGCTCCACGGCGCCGCCGGCGCCCCGGTGCCC

Basic information

species Zea mays
transcript GRMZM2G080231_T01
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148967828|gb|EE019116.2|EE019116
EST:     GATGCAAGAGACGTTCCCGGAGAGGTTCCAAGAACTCAAGATGTCATCCA                         GACGCTGGACAGGACGATCTCGAACCTGGAGATGGAGCTAGCGTCCGCGAA
genomic: GATGCAAGAGACGTTCCCGGAGAGGTTCCAAGAACTCAAGATGTCATCCAgtgagtaacc ... gatcaatcagGACGCTGGACAGGACGATCTCGAACCTGGAGATGGAGCTAGCGTCCGCGAA
EST: gi|148985913|gb|EE029820.2|EE029820
EST:     GATGCAAGAGACGTTCCCGGAGAGGTTCCAAGAACTCAAGATGTCATCCA                         GACGCTGGACAGGACGATCTCGAACCTGGAGATGGAGCTAGCGTCCGCGAA
genomic: GATGCAAGAGACGTTCCCGGAGAGGTTCCAAGAACTCAAGATGTCATCCAgtgagtaacc ... gatcaatcagGACGCTGGACAGGACGATCTCGAACCTGGAGATGGAGCTAGCGTCCGCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgtattatctgttccgacttccgatcgaactgttttgcctgtgatcaatcagGACGCTGGACAGGACGATCTCGAACCTGGAGATGGAGCTAGCGTCCGCGAAGGCGACGCAGGAGTCCATGCTCCACGGCGCCGCCGGCGCCCCGGTGCCC
     tattatct  TA-rich tract